Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74740 804 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT1G18890 788 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G51850 651 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT5G12480 641 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 637 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT5G19450 625 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT2G41860 612 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT2G31500 556 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 491 / 1e-170 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 486 / 2e-168 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008631 [exp] 823 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10042185 [exp] 696 / 0 AT1G74740 777 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Lus10033108 [exp] 694 / 0 AT5G12480 598 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Lus10030134 [exp] 652 / 0 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10004807 [exp] 650 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 645 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 640 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027361 [exp] 639 / 0 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014907 [exp] 633 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071700 [exp] 837 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.015G066200 [exp] 828 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 659 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.016G054600 [exp] 657 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G101300 [exp] 645 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G052900 [exp] 645 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.009G052700 [exp] 640 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.001G257100 [exp] 636 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.007G127000 [exp] 556 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.010G244800 [exp] 488 / 1e-168 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10036667 pacid=23174581 polypeptide=Lus10036667 locus=Lus10036667.g ID=Lus10036667.BGIv1.0 annot-version=v1.0 ATGGGCAACTGCAACACCTGCGTGAGGCCGGAGGACGACCAAACCTCCAAGAAGAAACCAGCCAAGGGGAGGAAACCTAACAACCCCTTCTCCGAAGATC CCACCCAATTCACGGCCCCGATCCGGGTCCTGAAGGACTTGGTCCCGCCCACCCAGCAGCAGCAGCAGCGGATCGGCGACAAGTACATCCTCGGCAGGGA ATTGGGCAGAGGAGAATTCGGGATTACGTATCTGTGTACCGACAAGGAGACGAAGGAGGCACTGGCTTGCAAGTCCATTTCCAAGCGGAAGCTCCGGACG GCGGTGGACATAGAGGATGTGAGGAGAGAAGTGGCCATCATGTCCAGCTTGCCCCAACACCCCAACATCGTAAAGCTGAGGGCTACTTATGAGGACGACG AGAACGTTCACTTGGTGATGGAGCTCTGTGAAGGAGGGGAGCTGTTTGACAGGATTGTGGCGAGAGGGCATTACAGCGAGCGAGCTGCTGCCACCGTCGC CAGGACGATTATGGAGGTGGTCAGGATGTGCCATGAGAATGGGGTTATGCACAGGGATCTTAAGCCTGAGAACTTCTTGTTTGCTAATAAAAAGGAGAAT TCTCCTCTCAAGGCCATCGATTTTGGGCTCTCCATCTTCTTTAACCCTGGTTGGGGTCTTCTTCCCTGGGAGAAATTTACTGAGATTGTTGGGAGTCCGT ATTACATGGCACCAGAGGTGTTGAAGAGGAATTATGGACCAGAGATAGATGTGTGGAGTGCTGGAGTTATACTCTACATTCTTCTATGTGGGGTTCCTCC ATTTTGGGCAGATCATCCATGGATTCAAAATGCAAAGAAAGCTCCAAATGTCCCGTTGGGGGATATCGTCAGGACAAGACTCAAACAGTTCTCCGTAATG AACAAATTCAAGAAGAAAGCACTCAGGGTAATTGCTGAACATTTATCACTTGAAGAGGTTGAGGTCATAAGAGATATGTTCACACTGATGGATACTGATG ATGATGGCAAAGTAACATATGAAGAGTTGAGGGCTGGTCTTCGGAAGGTCGGTTCACAGTTGGCTGAACCAGAGATCAAGATGCTGATGGAAGTGGCTGA TGTTAATGGAAATGGTATATTGGACTATGGAGAGTTTGTAGCAGTTACAATTCACCTGCAGAAGATGGAGAACGACGAGCACTTCCGGAGGGCATTTATG TATTTCGATAAGGATGGAAGTGGGTATATTGAGCTAGACGAGCTACGACAGGCCATGGCTGACGTAAACGGTGAAACTGATGATGATGTGCTCAATGACA TCATGCGCGAAGTAGACACCGACAAGGACGGAAGCATTAGTTATGATGAATTTGTGACGATGATGAAAACTGGAACTGACTGGAGAAAGGCGTCAAGGCA GTACTCAAGAGAAAGATTCAAGAGTTTGAGCCTCAACCTGATGAAAGACGGGTCCCTAGAGCTCCACGACGCGCTCACTGGTGAAGCCATTGCGGTGTAG
AA sequence Show only first row Show all	>Lus10036667 pacid=23174581 polypeptide=Lus10036667 locus=Lus10036667.g ID=Lus10036667.BGIv1.0 annot-version=v1.0 MGNCNTCVRPEDDQTSKKKPAKGRKPNNPFSEDPTQFTAPIRVLKDLVPPTQQQQQRIGDKYILGRELGRGEFGITYLCTDKETKEALACKSISKRKLRT AVDIEDVRREVAIMSSLPQHPNIVKLRATYEDDENVHLVMELCEGGELFDRIVARGHYSERAAATVARTIMEVVRMCHENGVMHRDLKPENFLFANKKEN SPLKAIDFGLSIFFNPGWGLLPWEKFTEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWADHPWIQNAKKAPNVPLGDIVRTRLKQFSVM NKFKKKALRVIAEHLSLEEVEVIRDMFTLMDTDDDGKVTYEELRAGLRKVGSQLAEPEIKMLMEVADVNGNGILDYGEFVAVTIHLQKMENDEHFRRAFM YFDKDGSGYIELDELRQAMADVNGETDDDVLNDIMREVDTDKDGSISYDEFVTMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLELHDALTGEAIAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18890		CPK10, ATCDPK1,...	calcium-dependent protein kina...		Lus10036667 [exp]	0	1
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	5.7	0.7838
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10033108 [exp]	6.6	0.8365
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	7.9	0.8338
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10011603 [exp]	8.3	0.7525
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	9.7	0.7607
AT4G02920			unknown protein		Lus10027996 [exp]	13.3	0.7933
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	16.0	0.7659
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	18.0	0.8093
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	18.7	0.7849
AT2G14910			unknown protein		Lus10013888 [exp]	23.0	0.7644

Compare expression of checked genes

Lus10036667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.