Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47940 444 / 5e-157 DNAJ heat shock family protein (.1) AT1G10350 398 / 6e-139 DNAJ heat shock family protein (.1) AT1G59725 393 / 4e-137 DNAJ heat shock family protein (.1) AT2G20560 369 / 2e-127 DNAJ heat shock family protein (.1) AT4G28480 357 / 1e-122 DNAJ heat shock family protein (.1.2) AT3G08910 354 / 6e-122 DNAJ heat shock family protein (.1) AT5G01390 342 / 5e-117 DNAJ heat shock family protein (.1.2.3.4) AT5G25530 317 / 7e-107 DNAJ heat shock family protein (.1) AT2G20550 238 / 6e-77 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 163 / 4e-47 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030803 [exp] 403 / 3e-141 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 393 / 4e-136 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10017687 [exp] 369 / 2e-127 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 362 / 1e-124 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10005033 [exp] 360 / 8e-124 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 359 / 1e-123 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10027803 [exp] 358 / 3e-123 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 330 / 2e-112 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 328 / 2e-111 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066100 [exp] 499 / 5e-179 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 409 / 1e-143 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 400 / 4e-140 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 363 / 3e-125 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 360 / 3e-124 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 353 / 5e-121 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 351 / 2e-120 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 350 / 5e-120 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 346 / 3e-118 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 345 / 3e-118 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036668 pacid=23174641 polypeptide=Lus10036668 locus=Lus10036668.g ID=Lus10036668.BGIv1.0 annot-version=v1.0 ATGGGGGTGGATTACTACAACATTCTGAAAGTCAATCGGAACGCCAGCGATGACGATCTCAAGAAGGCCTACAAGCGACTCGCCATGATTTGGCACCCGG ACAAGAACCCAACCTCCAAGAGAGCCGAGTCCGAAGCCAAGTTCAAGCAGATTTCCGAGGCTTACGACGTCCTCAGCGATCCTCAAAAGCGCCAGATCTA CGATCTTTACGGCGAGGAAGGCCTCAAATCTGGCCAGTTCCCTCACCCTTCCCCCGCCGCTTCTTCCTCCTCCTCCACCTCTGCCGCCAACAACACCAAT CGCCATTACTATCAAAAGCAGCATCCCAATCCCGCCTTCAGGTTCAAACCTAGGGACGCCGCCGATATTTATGAAGAATTGTTTGGGCAGGAGTCTGGCA CTGGTTCGTCTGGAGGTGGAAATGCAAATGCGACTGGTGGTGCCGGAGCAGGGGGAGCGGCTGGAGGGAGAGGGTATTCTAGGACGAATACTCATTTCCA TGGAAACGGAGGAGACATGAGAAAAGCAGCTGCGATCGAGAATTCGTTGGCGTGTAGCTTGGAGGAGCTTTACAAAGGGGTTAAAAAGAAGATGAGGATT TGCAGGAATGTCTGCGATGCTTATGGAAAGGCTCGAGCTGTTGAAGAGATCCTGACAATTGAGATAAAACCTGGGTGGAAGAAAGGTACAAAGATCACAT TCCCTGAGAAGGGGAACCAAGAGCCTGGTATTATACCTGCAGACCTGGTATTTGTGGTGGATGAGAAGCCACATCCGAGGTATAAAAGGGATGGTAACGA TCTGGTGGTGAGCCAGGAGATAAGCCTACTTGAAGCCCTAACTGGTAAGACTCTGGACATAGTAACACTGGATGGAAGAAATCTGATGTTCCCGGTGACA GATATAGTGAAACCTGGTGCTGAGGTGGTGATCCCAAATGAAGGAATGCCAATATCAAAAGAAGCTGGGAAGAGGGGAAATTTGAGGATCAAGATGGATG TAAGTTACCCATCAAGGCTTAGTGCAGAGCAGAAAGCTGAGCTGAGGAGGGTTCTGGGAGGAGTTTCGTAG
AA sequence Show only first row Show all	>Lus10036668 pacid=23174641 polypeptide=Lus10036668 locus=Lus10036668.g ID=Lus10036668.BGIv1.0 annot-version=v1.0 MGVDYYNILKVNRNASDDDLKKAYKRLAMIWHPDKNPTSKRAESEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGQFPHPSPAASSSSSTSAANNTN RHYYQKQHPNPAFRFKPRDAADIYEELFGQESGTGSSGGGNANATGGAGAGGAAGGRGYSRTNTHFHGNGGDMRKAAAIENSLACSLEELYKGVKKKMRI CRNVCDAYGKARAVEEILTIEIKPGWKKGTKITFPEKGNQEPGIIPADLVFVVDEKPHPRYKRDGNDLVVSQEISLLEALTGKTLDIVTLDGRNLMFPVT DIVKPGAEVVIPNEGMPISKEAGKRGNLRIKMDVSYPSRLSAEQKAELRRVLGGVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47940			DNAJ heat shock family protein...		Lus10036668 [exp]	0	1
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	2.4	0.7493
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038757 [exp]	2.8	0.7395
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	5.6	0.7573
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	15.1	0.7373
AT2G33585			unknown protein		Lus10016044 [exp]	15.5	0.6538
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	16.5	0.7469
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	27.4	0.7258
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	27.5	0.7373
					Lus10014600 [exp]	27.7	0.7232
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	29.7	0.6971

Compare expression of checked genes

Lus10036668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.