Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62680 691 / 0 Major facilitator superfamily protein (.1) AT1G18880 674 / 0 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 668 / 0 Major facilitator superfamily protein (.1) AT1G69870 462 / 5e-156 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 388 / 9e-128 NRT1.6 nitrate transporter 1.6 (.1) AT1G68570 376 / 5e-123 Major facilitator superfamily protein (.1) AT3G54140 363 / 3e-118 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 358 / 3e-116 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT5G28470 357 / 3e-116 Major facilitator superfamily protein (.1) AT1G69860 354 / 7e-115 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033106 [exp] 1029 / 0 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 650 / 0 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10037221 [exp] 449 / 7e-151 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 446 / 2e-149 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10035860 [exp] 377 / 5e-123 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10024345 [exp] 367 / 2e-119 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 368 / 3e-119 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 365 / 3e-118 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 362 / 2e-117 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071500 [exp] 789 / 0 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 662 / 0 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 647 / 0 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 626 / 0 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 466 / 7e-158 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.001G185700 [exp] 385 / 3e-126 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 376 / 4e-123 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 373 / 1e-121 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 371 / 8e-121 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 369 / 2e-120 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10036669 pacid=23174621 polypeptide=Lus10036669 locus=Lus10036669.g ID=Lus10036669.BGIv1.0 annot-version=v1.0 ATGGAAATGGGTCAGAAAACTCCCACCATTCCCAACTCAATGGCATCTGACACTAATGGCAATCATTCTACACAGAAATCATCAGCCATGGAGATTGATA AGCAAGTTGAAGAAGAAGAAAAAAAACCCATTTACAGAGGGTGGAAATCCATGCCCTTTATCATCGGAAATGAGACGTTCGAAAAGCTAGGAGCAATCGG CACACTATCCAACTTGCTAATATACCTCACCACAGTTTTCAACTTGTCCAACCTCAAAGCAGCTACCATCATCTCTGTTTTCAACGGCACCGCTAATTTC GGCACTCTCCTCGGTGCCTACATCTGCGACACTTTCCTCGGACGCTACAACACCTTGGCCGCCGCCTCCCTCGCCTCCTTCCTCGGACTACTTCTGATCC AGCTAACCGCCGCAATCCCAGGCCTTCACCCGCCGACATGCCGCAAATCCGACGCTACCTGCGAGGAACCGACGACCGGGCAAATGGGTTTCCTCCTCAC CGGATTTGCGCTCATGATAGTCGGAGCAGGTGGTATCCGGCCCTGCAACTTGGCATTCGGAGCGGACCAGTTCGACCCGAATACAGAGTCTGGGAGGAGA GGAATCAACAGCTTCTTCAATTGGTACTTCTTCACTTTCACCTTTGCTAAGATGGTATCCGTCACTCTCATCGTCTACATCCAAGCCAATGTCAGCTGGT CCATCGGATTGGCCATTCCTGCCATCCTCATGCTCGTTTCCTGTGCTCTGTTCTTCGCCGGTACCAAGCTCTACGTCATCGTTAAAGCTAGTGGCAGCCC TGTCACTAGCCTTGTTCAGGTGTTTGTGGTTGCCATCAAGAAGAGAAAGCTCAAGAAACTTGAGCAGCCGTGGAATTCGCTTTTCAATTACTTCTCTACC AAGTCCATCAATAAACGCCTCACTTACACCCACCAATTAACGTGGTTGGACAAAGCAGCAATTGTGACACCCAATGACAAAATCAACGCCGACGGGTCGA CGGCGAACCCGTGGCAACTATGCAGCTTACAGCAAGTGGAAGAAGCGAAATGCGTGGTGAAAGTGCTTCCCGTATGGCTATCTGGAATAATTTACCATCT TGCCCTCGGGCAACAGAACACCTATGCAGTTTTCCAAGCAAATCAAGCAGACAGGCGCCTCGGGAACTCCAACTTCCAGATCCCCGCAGCCACCTACGTC GTCTTCCTAATGCTCAGCCTAACGGCTTTCATCCCTATCTACGACCGGATTTTGGTCCCCTCCTTGAGAAGAATGACCGGAAAAGAAGGAGGGATCACCG TACTCCAGAGGTTAGGGATCGGAATTATAATATCTATCCTGACAATGCTGGTCTCGGGCTTGGTGGAGGAGCGACGTAGACACATCGCTCTCACCAGCCC GACAATAGGGATGGCTCCCAGGAGGGGAGCTATTTCGGCAATGTCGGCATTCTGGCTGGTACCGCAATTTGTATTGGCCGGAGTGGCGGAGGTGTTCGGG GCGGTGGGGCAAGTCGAATTCTACTACAAGCAGTTTCCGGAGAATATGAGGAGCGTGGCCGGGGCATTGAATTATTGTGGGATGGCCGGTGCGAGTTACC TTAGTACATTGTTGATACAAGTGGTTCATAAGACGACGGAGGGGGCGGCTACGGGGAATTGGTTGCCCGAGGATTTGAACAAAGGTAGGTTGGATTACTA CTATTACCTTGTTGGTGGGTTGGGGATTTTGAATTTCGGTTACTTTTTGTGGTGCTCGAGAGGCTATCAATACAAAAAGGATAAGGAAGATTCGATTGAA CCAGATGATCAAGAGAGGGTTGAGGAATTCGAAAAAGTGTCGGCTTGA
AA sequence Show only first row Show all	>Lus10036669 pacid=23174621 polypeptide=Lus10036669 locus=Lus10036669.g ID=Lus10036669.BGIv1.0 annot-version=v1.0 MEMGQKTPTIPNSMASDTNGNHSTQKSSAMEIDKQVEEEEKKPIYRGWKSMPFIIGNETFEKLGAIGTLSNLLIYLTTVFNLSNLKAATIISVFNGTANF GTLLGAYICDTFLGRYNTLAAASLASFLGLLLIQLTAAIPGLHPPTCRKSDATCEEPTTGQMGFLLTGFALMIVGAGGIRPCNLAFGADQFDPNTESGRR GINSFFNWYFFTFTFAKMVSVTLIVYIQANVSWSIGLAIPAILMLVSCALFFAGTKLYVIVKASGSPVTSLVQVFVVAIKKRKLKKLEQPWNSLFNYFST KSINKRLTYTHQLTWLDKAAIVTPNDKINADGSTANPWQLCSLQQVEEAKCVVKVLPVWLSGIIYHLALGQQNTYAVFQANQADRRLGNSNFQIPAATYV VFLMLSLTAFIPIYDRILVPSLRRMTGKEGGITVLQRLGIGIIISILTMLVSGLVEERRRHIALTSPTIGMAPRRGAISAMSAFWLVPQFVLAGVAEVFG AVGQVEFYYKQFPENMRSVAGALNYCGMAGASYLSTLLIQVVHKTTEGAATGNWLPEDLNKGRLDYYYYLVGGLGILNFGYFLWCSRGYQYKKDKEDSIE PDDQERVEEFEKVSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62680			Major facilitator superfamily ...		Lus10036669 [exp]	0	1
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	2.6	0.8404
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	4.9	0.7840
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	9.8	0.7891
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Lus10029531 [exp]	16.7	0.7761
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	19.4	0.7668
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	20.0	0.7681
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	23.6	0.7611
					Lus10023972 [exp]	24.0	0.6878
AT4G27290			S-locus lectin protein kinase ...		Lus10014812 [exp]	24.0	0.7068
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	24.1	0.7680

Compare expression of checked genes

Lus10036669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.