Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05160 304 / 3e-98 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 302 / 3e-97 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G45340 266 / 9e-84 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 260 / 2e-81 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 259 / 6e-81 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 241 / 3e-74 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT5G38970 236 / 5e-72 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G30180 229 / 1e-69 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G05690 229 / 2e-69 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 228 / 5e-69 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033105 [exp] 593 / 0 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036671 [exp] 529 / 0 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10043357 [exp] 291 / 6e-93 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10019513 [exp] 248 / 6e-77 AT1G05160 540 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10033308 [exp] 244 / 5e-75 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 243 / 1e-74 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 239 / 1e-73 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 239 / 6e-73 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 234 / 2e-71 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071300 [exp] 653 / 0 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.012G071200 [exp] 484 / 3e-170 AT1G05160 181 / 3e-52 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G179100 [exp] 311 / 6e-101 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 295 / 2e-94 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G029100 [exp] 250 / 1e-77 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 240 / 1e-73 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.002G126100 [exp] 239 / 2e-73 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.001G200100 [exp] 237 / 2e-72 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.009G101700 [exp] 236 / 3e-72 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.007G026500 [exp] 236 / 4e-72 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036670 pacid=23174635 polypeptide=Lus10036670 locus=Lus10036670.g ID=Lus10036670.BGIv1.0 annot-version=v1.0 ATGGAGGAGACAGCAACGTCTGCAGTACTGGTAGCGGTGGTGCTGGGAGCTCTACCACTCGTCGTACTGACGATATGGTGGTGGAACGAGCTACGATTTG CTTTGCCCGTAAAGATGAAACTACGCGGCAGCGGAATTATTCTCCCCGCTGGACACATGGGGATGCCTTTCTTCGGCGAAATGCTCACTTTCCTCTGGTA CTTCAAAATCGTCAAACGTCCAGACGAGTTCATCGACTCCAAGCGACGCAAGTATGGGGATGGAGTCGGATTGTACAGAAGCCACCTGTTCGGTAAACCC ACGATTATAGCGTGCTTGCCGGCGGTGAGCAGGTACGTGTTCCAGAAAGATGACGCTTTTATCCTCGACTGGCCCAGCCTTGACCTCGTGGGTCCTACTT CACTGGTTGCGGTTCACGGGTCCCACCACGCCAGGCTCCGAAGGTTCCTAACCAATGCTATTAACCACCCTGTTGCCCTTCGCCGGATCGCATCTCTCGT CCAGCCCAATCTAACTTCCGCTTTGCAGTCCTGGGCCCACACCGGCAGAGTCAACGCTTACAAACAAGTCAAAAAGGTGACATTTGAGAACATAGGAAGA TTATTCGCAAGCTTGGAAGCAGGGCCAGAATTGTTTGCAATGGATGAACTGTTCCAAGGGATGACCGAAGGGTTTAGAGCTCAGCCTCTCAACTTGCCTG GAACTGCATATCACCATGCTCTTCAGTGCAGGAAGAAGGTGACAGATATATTCAGGAAGGTGCTGGAGAAAAGGAAGGAGGCGGAGAATGAGGAGGATGA CGATCTAATGGACGGATTAAGAAGAGTGGAAGACGAGGATGGAAATAGATTGAGTGACGAGGAAGTGTTGGATAATATCGTAAGCTTTGTGATTGCTGGA TACGAGTCAACTTCCCTTTCCATCATGTGGTCTACTTATTATCTTGCCAAATACCCCCACGTCCTCGCCAAACTAAGGGAGGAGAACATGGCTCTACGGA AGAACAAGGCTGATGGGGAGTTCATTACAAGTGATGACATCGCAAAACTCAAGTACACTAATAAGGTGGTGGAAGAGACCATAAGGCTAGCCAACATTGC AGCTGTTGTTTTCAGATTGGCAACCAAAGATGTTGACTACAAAGGTTACAGAATTCCGAACAAGTGGACAGTAGCAGTATGGATTCGATATCTCCACACA AATTCTCAGAATTACAACGATCCTATGTGTTTCAACCCAGACAGATGGGATGTAGCTCCATCCCCTGGATCGTACCAAGTGTTTGGCGGAGGATCGAGGA TTTGTGCTGGGAATATGCTGGCCAGAATACAACTCGCTGTCTTTCTTCATCACTTGTCCACCGGTTACAAGTGGGAACTCGTAAATCCTGATGCTCCTAT GATCTACTTGTCGCATCCTACTCCCACCGATGGTGTCGAGATTTCAATCGCCAAGCTTTGA
AA sequence Show only first row Show all	>Lus10036670 pacid=23174635 polypeptide=Lus10036670 locus=Lus10036670.g ID=Lus10036670.BGIv1.0 annot-version=v1.0 MEETATSAVLVAVVLGALPLVVLTIWWWNELRFALPVKMKLRGSGIILPAGHMGMPFFGEMLTFLWYFKIVKRPDEFIDSKRRKYGDGVGLYRSHLFGKP TIIACLPAVSRYVFQKDDAFILDWPSLDLVGPTSLVAVHGSHHARLRRFLTNAINHPVALRRIASLVQPNLTSALQSWAHTGRVNAYKQVKKVTFENIGR LFASLEAGPELFAMDELFQGMTEGFRAQPLNLPGTAYHHALQCRKKVTDIFRKVLEKRKEAENEEDDDLMDGLRRVEDEDGNRLSDEEVLDNIVSFVIAG YESTSLSIMWSTYYLAKYPHVLAKLREENMALRKNKADGEFITSDDIAKLKYTNKVVEETIRLANIAAVVFRLATKDVDYKGYRIPNKWTVAVWIRYLHT NSQNYNDPMCFNPDRWDVAPSPGSYQVFGGGSRICAGNMLARIQLAVFLHHLSTGYKWELVNPDAPMIYLSHPTPTDGVEISIAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036670 [exp]	0	1
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Lus10022400 [exp]	2.6	0.7095
					Lus10027352 [exp]	11.6	0.6919
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	21.1	0.6885
AT1G48170			unknown protein		Lus10022781 [exp]	22.3	0.6395
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	24.1	0.6178
					Lus10027118 [exp]	24.2	0.6102
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	29.6	0.6441
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10009876 [exp]	36.1	0.6403
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	36.2	0.6174
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	36.9	0.6037

Compare expression of checked genes

Lus10036670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.