Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05160 284 / 2e-90 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 282 / 9e-90 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT5G45340 227 / 5e-69 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 222 / 6e-67 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 218 / 2e-65 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT1G19630 206 / 1e-60 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT3G13730 204 / 4e-60 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G05690 189 / 2e-54 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G12740 187 / 1e-53 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT2G42850 186 / 3e-53 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033105 [exp] 870 / 0 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10036670 [exp] 530 / 0 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10043357 [exp] 262 / 5e-82 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10019513 [exp] 242 / 9e-75 AT1G05160 540 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10042652 [exp] 222 / 1e-66 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 217 / 6e-65 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10021725 [exp] 216 / 1e-64 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10034768 [exp] 216 / 1e-64 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10024272 [exp] 202 / 1e-59 AT1G19630 592 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071300 [exp] 518 / 0 AT1G05160 285 / 9e-91 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.012G071200 [exp] 357 / 2e-120 AT1G05160 181 / 3e-52 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G179100 [exp] 278 / 5e-88 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.013G161800 [exp] 266 / 2e-83 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.014G029100 [exp] 216 / 7e-65 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 211 / 1e-62 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.002G126100 [exp] 210 / 2e-62 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 210 / 3e-62 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 207 / 3e-61 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G060700 [exp] 206 / 7e-61 AT2G42850 582 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036671 pacid=23174407 polypeptide=Lus10036671 locus=Lus10036671.g ID=Lus10036671.BGIv1.0 annot-version=v1.0 ATGGGTTTCCCCTTCATCGGAGAACTCATTCCCTTCCTTTGGTACTTCAAGTTCCTCCGCCGCCCAGACTATTTCATCAACTCAAAGCGACACAAATACG GAGATGGGGTGGGACTGTACAGAACCTACTTGCTGGGGCAGCCATCGATCATCGCCTGTACAGCGGAAAGCAGTAGGTTCGTGCTCCAATCCGACGACGC CTTCTGCCTCCAGCGATGGCCCACCAACGACCTCGTCGGCCACCACTCTTTGTCAGCGGCGTTGGGCCCCAGCCACAAACGCCTCCGTAATTTCGTCTCG GTGGCCGTCAACCAGCCGAATGCTCTCCGCATGTCCGCTGTCCTCAGCCAGCCCATCATCGCCGCATCGCTCCGCTCCTGGGCCGACCGAGGCACTGTCA CGGTTCATACTGAAGCTAAAAAGATGACATTTGAGAGCATAGGGAAGCTGTTTGTGAGCTTTGAGCCAGGGCCTGTTATGGAACAGTTGGACGTTTACTT TGGGGGAATGATGAAAGGAATGAGGGCTACTCCAATCAATCTCCCTGGGACTCCATTTCACCACGCACTTAAGTGTAGGAAGAGGTTGGAGGCAGTGTTC AGAGGAGAGCTGGAGAAGAGGAAGCAGAAGAAGAGAAATCTGAAAGAAGAGGAGGAGGAGGGAAAAGATCTAATGGATGGATTGATGCAAGTTAGGGATG AGAATGGTGATTTGTTGAGCGACGAAGAAGTAGTGGATAACATCGCCAGCCTTGTTGTTGGCGGCTATGATTCCACCGCCCTTTCTTCCATGTGGGCTGT CTATTGTCTGGCTAAGTATCCGGACGTACTCAGCAAACTTCGAGTGAGCTTTTTGATCTGCAGAGGACAAATGAGTCAATACTTTGTGCAGTTCCTTTTG ATTGAGTGGACTGGAATGTTGTTGCAGGAGGAGAACATGGTTCTGAAGGAGAAAAGTGATGGGGAGTTTATAACATACGACGTTATCTCGAGACTCAAGT ACACAAAAAAGGTGGTGGAGGAAGTAGTAAGAATGGCGAATGTCTCTGTTTTTGCCTTCCGTTTAAGTGATAGAGACGTGGAGTTTCAAGGCCATGTTAT TCCAAAAGGGTGGAAGGTGTTGTGCTGGCTTCGATACGTTCACACAGATTCAAGGAACTTCGAGGACCCACTCTGTTTCAACCCTGACAGATATGATGGA GGAGGAAAGCCAAGCGGGTTTCAAGTGTTCGGAGCAGGAACAAGGATATGCGTTGCGAACATTTTCGCCAGGACCCATCTTGCCATCTTTCTTCACCACC TCTCTACCGGATACCAGTGGGAATTAGTAAATCCGGATGCAGGGATTGATTATCTTCCTCATCAAAGACCAGCCGATGGAGTCGAGATTTTCATCACCAA ACTTTGA
AA sequence Show only first row Show all	>Lus10036671 pacid=23174407 polypeptide=Lus10036671 locus=Lus10036671.g ID=Lus10036671.BGIv1.0 annot-version=v1.0 MGFPFIGELIPFLWYFKFLRRPDYFINSKRHKYGDGVGLYRTYLLGQPSIIACTAESSRFVLQSDDAFCLQRWPTNDLVGHHSLSAALGPSHKRLRNFVS VAVNQPNALRMSAVLSQPIIAASLRSWADRGTVTVHTEAKKMTFESIGKLFVSFEPGPVMEQLDVYFGGMMKGMRATPINLPGTPFHHALKCRKRLEAVF RGELEKRKQKKRNLKEEEEEGKDLMDGLMQVRDENGDLLSDEEVVDNIASLVVGGYDSTALSSMWAVYCLAKYPDVLSKLRVSFLICRGQMSQYFVQFLL IEWTGMLLQEENMVLKEKSDGEFITYDVISRLKYTKKVVEEVVRMANVSVFAFRLSDRDVEFQGHVIPKGWKVLCWLRYVHTDSRNFEDPLCFNPDRYDG GGKPSGFQVFGAGTRICVANIFARTHLAIFLHHLSTGYQWELVNPDAGIDYLPHQRPADGVEIFITKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10043227 [exp]	1.4	0.8978
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	3.7	0.8984
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	4.9	0.8853
AT2G45720			ARM repeat superfamily protein...		Lus10016848 [exp]	6.3	0.8664
AT4G34150			Calcium-dependent lipid-bindin...		Lus10002825 [exp]	6.3	0.8569
					Lus10021578 [exp]	6.6	0.8133
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	8.8	0.8437
AT4G25030			unknown protein		Lus10034730 [exp]	9.9	0.8376
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	14.6	0.8666
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	15.5	0.7916

Compare expression of checked genes

Lus10036671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.