Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62710 917 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 591 / 0 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 552 / 0 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G45780 321 / 1e-101 Leucine-rich repeat protein kinase family protein (.1) AT2G23950 317 / 4e-100 Leucine-rich repeat protein kinase family protein (.1) AT5G16000 317 / 1e-99 NIK1 NSP-interacting kinase 1 (.1) AT5G07280 328 / 2e-99 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G78530 306 / 4e-99 Protein kinase superfamily protein (.1) AT3G25560 311 / 7e-98 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G65240 308 / 6e-97 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033104 [exp] 1197 / 0 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 600 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10033291 [exp] 510 / 7e-170 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10030591 [exp] 327 / 1e-103 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 325 / 5e-103 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 321 / 2e-101 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10007292 [exp] 318 / 5e-101 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035783 [exp] 317 / 2e-98 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10015484 [exp] 313 / 3e-98 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071100 [exp] 1002 / 0 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 597 / 0 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 586 / 0 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.005G083300 [exp] 353 / 7e-114 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 347 / 1e-111 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.017G108000 [exp] 328 / 2e-104 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.001G380800 [exp] 316 / 8e-103 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1) Potri.004G108200 [exp] 323 / 2e-102 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.011G068700 [exp] 320 / 3e-101 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G094500 [exp] 317 / 4e-100 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036672 pacid=23174652 polypeptide=Lus10036672 locus=Lus10036672.g ID=Lus10036672.BGIv1.0 annot-version=v1.0 ATGGGTGTCCTTGGATTGGTGTTTGCTCTCATTTCTACGGCAACCCTCCTCATCTCTCCGTCTGATGCTCTTTCTGAAGATGGTCTTACATTGTTGGAGC TGAAGGGAACATTGAATGACACTAATAACAAACTTGCAAACTGGCAAGCCACTGATGGATCTCCTTGTCAATGGACTGGAATTTCCTGCCATGCTAATGA AGACAGAGTTAGCTCTATAAACCTTCCTTACATGCAACTTGGAGGGATTATATCTTCTAGCATTGGGAAGCTGAGTAGGTTGCAGAGATTGGCACTTCAT CAGAATAGCTTACACGGAGTTATTCCAAATGAATTAACCAATTGTAGTGAACTCAGAGCACTGTACTTGAGAGCTAATTACCTGCAAGGAGGAATCCCTT CTAACATTGGAAACCTTTCCCATCTCAATATACTGGATTTGTCGAGCAATTCTCTCAAGGGTGCTATACCTTCATCTATTGGCAGACTTACACACTTGCG TCACTTGAACTTATCCACCAACTTCTTCTCTGGGGAAATACCTGACTTTGGAGCTCTAAGCACATTTGGGAATAGTTCGTTTCTCGGTAATTTGGATCTT TGTGGTAGACAAGTGCAAAAGCCATGTAGAACTTCCCTCGGATTCCCTGTGGTGCTACCACATGCTGCTAGTGATGAAACATCAGTTCTAGCGAAACGTT CTTCTCATTCCATCAAAGGCCTGCTAATCGGTTTAATATCCGTCATGGGTTTGACAATCATTGTGCTCTTTGGTTGTCTCTGGATATGCTTGCTGTCCAA GAAGGAAAGAGCTGCTAAGAAATACACCCAAGTCAAGAAGCAAGTTCACAAGGAAGCAAGCACAAAGCTTATTACTTTCCATGGTGATCTACCATACACT TCGTTTGAGATCATCGAGAAGCTCGAGTCTCTTGATGAGCATGACGTAGTAGGTTCTGGAGGATATGGTACTGTGTATCGTATGGTCATGAATGACTGTG GAACATTTGCTGTAAAAAGGATTGACCGTGGTCGCGAAGGATCTGATCAAGTGTTTGAGAGGGAGTTAGAGATTCTGGGCAGCATCAAGCACATAAATTT GGTGAATCTGAGAGGTTACTGCAGGCTTCCTGCATCAAAGCTTCTTATCTATGACTATCTAGCTATGGGAAGTGTAGATGACTTCTTACACGGACAACCT GATCAAGATAAGCAGTTGAAGTGGAGCGCTCGTTTAAGAATAGCCTTGGGTTCTGCTCGTGGAATTGCATACCTGCACCACGACTGTTCACCGAAGATAG TCCATCGGGATATAAAATCCAGCAACATTCTGCTTGATGAGAATTTGGAACCTCATGTCTCAGATTTCGGCCTAGCCAAGCTGTTGGTTGATGAAGATGC ACATGTTACAACTGTCGTTGCTGGAACATTCGGTTATTTGGCACCAGAGTATCTACAGAGTGGGAGAGCCACTGAGAAGTCAGATGTATATAGCTTTGGA GTTCTTTTGCTAGAGCTTGTGACTGGGAAAAGACCAACTGATCCAACATTCGTGAAGAGAGGCCTGAATGTTGTTGGATGGATGAATACATTGCTGAAGG AGAGAAGGCTGGAGGATGTGGTGGATAAAAGATGCAATGATGCAGGCATGGAAGTAGTTGAAGCAGTGCTAGAGATCGCAGCAAGGTGCACAGATGCAAA CCCTGATGATCGCCCAACGATGAACCAAGTCCAGCAGTTGCTTGGGCAGGAAGTAATGTCCCCTTGCCCAAGTGAAATGTACGATTCTCAATCGGACTAT TGCTGA
AA sequence Show only first row Show all	>Lus10036672 pacid=23174652 polypeptide=Lus10036672 locus=Lus10036672.g ID=Lus10036672.BGIv1.0 annot-version=v1.0 MGVLGLVFALISTATLLISPSDALSEDGLTLLELKGTLNDTNNKLANWQATDGSPCQWTGISCHANEDRVSSINLPYMQLGGIISSSIGKLSRLQRLALH QNSLHGVIPNELTNCSELRALYLRANYLQGGIPSNIGNLSHLNILDLSSNSLKGAIPSSIGRLTHLRHLNLSTNFFSGEIPDFGALSTFGNSSFLGNLDL CGRQVQKPCRTSLGFPVVLPHAASDETSVLAKRSSHSIKGLLIGLISVMGLTIIVLFGCLWICLLSKKERAAKKYTQVKKQVHKEASTKLITFHGDLPYT SFEIIEKLESLDEHDVVGSGGYGTVYRMVMNDCGTFAVKRIDRGREGSDQVFERELEILGSIKHINLVNLRGYCRLPASKLLIYDYLAMGSVDDFLHGQP DQDKQLKWSARLRIALGSARGIAYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFG VLLLELVTGKRPTDPTFVKRGLNVVGWMNTLLKERRLEDVVDKRCNDAGMEVVEAVLEIAARCTDANPDDRPTMNQVQQLLGQEVMSPCPSEMYDSQSDY C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62710			Leucine-rich repeat protein ki...		Lus10036672 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	4.1	0.9444
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	6.6	0.9348
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	6.9	0.9341
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10021322 [exp]	7.1	0.8863
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	10.7	0.9318
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	13.4	0.9207
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	16.2	0.9235
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	16.7	0.9336
AT1G61170			unknown protein		Lus10011222 [exp]	20.3	0.9302
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	20.9	0.9044

Compare expression of checked genes

Lus10036672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.