Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62720 259 / 2e-87 Integral membrane HPP family protein (.1.2) AT3G47980 251 / 3e-84 Integral membrane HPP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033103 [exp] 351 / 3e-123 AT5G62720 239 / 3e-79 Integral membrane HPP family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065500 [exp] 284 / 2e-97 AT5G62720 278 / 8e-95 Integral membrane HPP family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF04982 [flax] [poplar] HPP HPP family
Representative CDS sequence Show only first row Show all	>Lus10036673 pacid=23174552 polypeptide=Lus10036673 locus=Lus10036673.g ID=Lus10036673.BGIv1.0 annot-version=v1.0 ATGGCCACTCGCCATTTACTCCAATATCACAATAGCTGCTGCTGTTCCTATTTCCATCATTTCACACCCCAAACCTCCTCTGCTTCTCCTCGTCCAACAA GACTACCTCTACTTTTGCCCACCAAAGGTATTACTATTAGAAATGGACGGCGGGTAAGGAGTCGGACTCCTCCGCTGGTGGTGACGGCGGCAGGGAACAA TGCGGCAGATCCCTTGTGGTGGGACGCGTGGAAGCCTGATAATAACTCTGCTTCTCCTCCTGTTTCCCTTAGCGACATCTTCTGGCCTTCTGCAGGAGCA TTTGCGGCAATGGCGTTACTGGGGAAGGTGGATCAAATGCTAGCCCCAAAAGGAGTTTCAATCACAATTGCTCCCCTTGGTGCCGTCTGTGCCGTCCTCT TCTCAACTCCTTCTTCTCCCGCTGCTCGGAAGTACAATATGTTCATGGCACAAATCGGTTGTGCAGCCATCGGGGTGCTGGCATTCTCATTGCTCGGCCC GGGATGGCTAGCTAGAAGCACCGCTCTTGCTGCCTCTATAGCTTTCATGATCTATACCCGATCCAATCACCCCCCAGCCGCCAGCTTGCCCCTTTTGTTT ATTGATGGAGCAAAGCTGCACGGCTTGAATTACTGGTATGCTCTGTTCCCTGGTGCCGCTGGATGCCTCATCCTCTGTTTCCTACAAGAGATGGTGAGTT ACCTGAAGAAACATGTGAAATTCTGA
AA sequence Show only first row Show all	>Lus10036673 pacid=23174552 polypeptide=Lus10036673 locus=Lus10036673.g ID=Lus10036673.BGIv1.0 annot-version=v1.0 MATRHLLQYHNSCCCSYFHHFTPQTSSASPRPTRLPLLLPTKGITIRNGRRVRSRTPPLVVTAAGNNAADPLWWDAWKPDNNSASPPVSLSDIFWPSAGA FAAMALLGKVDQMLAPKGVSITIAPLGAVCAVLFSTPSSPAARKYNMFMAQIGCAAIGVLAFSLLGPGWLARSTALAASIAFMIYTRSNHPPAASLPLLF IDGAKLHGLNYWYALFPGAAGCLILCFLQEMVSYLKKHVKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62720			Integral membrane HPP family p...		Lus10036673 [exp]	0	1
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Lus10020434 [exp]	4.4	0.7768
AT3G17090			Protein phosphatase 2C family ...		Lus10037779 [exp]	8.9	0.7242
AT5G62720			Integral membrane HPP family p...		Lus10033103 [exp]	10.5	0.6836
AT1G25550	GARP		myb-like transcription factor ...		Lus10034280 [exp]	12.2	0.6863
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	31.4	0.6623
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	32.7	0.6313
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	34.3	0.6569
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	34.9	0.6703
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	44.0	0.6783
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	45.6	0.6974

Compare expression of checked genes

Lus10036673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.