Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 153 / 9e-45 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 137 / 1e-38 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT4G40060 136 / 6e-38 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 135 / 3e-37 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT2G22430 134 / 6e-37 HD ATHB6 homeobox protein 6 (.1) AT5G15150 131 / 5e-36 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 127 / 1e-34 HD ATHB20 homeobox protein 20 (.1) AT1G27045 115 / 9e-31 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT3G61890 111 / 6e-29 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT1G26960 110 / 2e-28 HD ATHB23 homeobox protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033102 [exp] 429 / 9e-153 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 253 / 9e-83 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10004270 [exp] 251 / 4e-82 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 159 / 9e-47 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 157 / 4e-46 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 133 / 1e-36 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10012845 [exp] 129 / 1e-35 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 129 / 1e-35 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10036730 [exp] 130 / 2e-35 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065400 [exp] 278 / 9e-93 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 270 / 2e-89 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 163 / 4e-48 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.005G071900 [exp] 140 / 3e-39 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 139 / 6e-39 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.017G081700 [exp] 132 / 3e-36 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.005G161500 [exp] 128 / 3e-35 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.002G100600 [exp] 128 / 4e-35 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.008G148200 [exp] 127 / 9e-35 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.010G093400 [exp] 127 / 1e-34 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10036674 pacid=23174458 polypeptide=Lus10036674 locus=Lus10036674.g ID=Lus10036674.BGIv1.0 annot-version=v1.0 ATGGCTGCTGACGGCAATGTTCCTGGTGATTGTATTACTAATTTCGCTCTTCTGAATCAGACTCCAACATTTTCTGGGGTTTCCAAGCCACCACTTGGAC CATTTTTCCTCACTAGATCGTCTTCTCCTTCTTTCTTCGGTCGGAGATCCATATTCCGTTTTGAGGATGCTGACAATCAAGTGCGCTCATTCCAACTCAA CGAGAATGGAGACGATGACGATAAATATGATGATTTGGATTATTTTCGGCAGCCAGAGAAGAAGAGGAGGCTATCAGCTGACCAAGTTAAGTTTCTAGAG AAGAGCTTTGAGGTGGAGAACAAGCTTGAACCTGAGAGGAAGACACAGCTAGCCAAGGACCTGTGCCTGCAGCCTCGCCAGGTTGCTATATGGTTCCAGA ACCGCCGAGCAAGGTGGAAGACTAAACAGCTGGAGCAGGATTATCAGACACTGGAGTCTAGCTATGACACCCTTAAGGCCGACTGTGATTGCCTTGTCAA GGAAAATGATCAATTGAAAGCTGAGATCAATTTGCTTACAGACAAGCTGCAGATGAAGAAGGAGCATATTGACACAGAATGTGAAAAGGTGATGATAATT TGTGAAGAACCATTGCAGAAGCCTTGTGCAGGTGCAGCCATTGACTCAGGTTCGGAGGGAATTACTTCAGGTGTTGTTAGCTGTAAGCAGCAGGATGATA TGAGCTCAGCTAGAAGTGATGTATTCGATTCAGACAGCCCGCGTGGTGTTCACTCCTCATTGTTAGATGAATCGGATCATTCCCAGGATAAAGAAGATAA CTTGAGCAAGAGTCTCCTGCCTGAATCATACTTGTTCCCAAAGCTAGAAGATGATGATTACTCGGACCCATCTGCAAACTTTGAAAACCATTCCTTCTGG TCCTCCTGGCCATACTGA
AA sequence Show only first row Show all	>Lus10036674 pacid=23174458 polypeptide=Lus10036674 locus=Lus10036674.g ID=Lus10036674.BGIv1.0 annot-version=v1.0 MAADGNVPGDCITNFALLNQTPTFSGVSKPPLGPFFLTRSSSPSFFGRRSIFRFEDADNQVRSFQLNENGDDDDKYDDLDYFRQPEKKRRLSADQVKFLE KSFEVENKLEPERKTQLAKDLCLQPRQVAIWFQNRRARWKTKQLEQDYQTLESSYDTLKADCDCLVKENDQLKAEINLLTDKLQMKKEHIDTECEKVMII CEEPLQKPCAGAAIDSGSEGITSGVVSCKQQDDMSSARSDVFDSDSPRGVHSSLLDESDHSQDKEDNLSKSLLPESYLFPKLEDDDYSDPSANFENHSFW SSWPY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	0	1
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	1.7	0.9355
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	1.7	0.9240
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	2.2	0.9199
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	3.5	0.9322
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	5.3	0.9075
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	5.7	0.9230
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	5.7	0.8845
AT5G05340			Peroxidase superfamily protein...		Lus10009934 [exp]	6.9	0.9048
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	6.9	0.9076
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	7.1	0.8838

Compare expression of checked genes

Lus10036674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.