Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27210 275 / 3e-85 ARM repeat superfamily protein (.1) AT5G62580 211 / 4e-61 ARM repeat superfamily protein (.1) AT4G27060 114 / 1e-26 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G59850 108 / 5e-25 ARM repeat superfamily protein (.1) AT1G50890 99 / 1e-21 ARM repeat superfamily protein (.1) AT2G07170 58 / 9e-09 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010730 [exp] 852 / 0 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10033129 [exp] 233 / 2e-69 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10036647 [exp] 232 / 4e-69 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10011149 [exp] 102 / 1e-22 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 99 / 2e-21 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 82 / 4e-16 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10008545 [exp] 81 / 9e-16 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10027590 [exp] 61 / 2e-09 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10019618 [exp] 59 / 6e-09 AT4G27060 507 / 8e-171 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192100 [exp] 423 / 3e-142 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 415 / 2e-139 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 292 / 8e-92 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 272 / 4e-84 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 108 / 1e-24 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 107 / 2e-24 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 87 / 1e-17 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036675 pacid=23171032 polypeptide=Lus10036675 locus=Lus10036675.g ID=Lus10036675.BGIv1.0 annot-version=v1.0 ATGCTGACGGTGGAACAAGATCTGAACGCTCAGATCGGGGCGGCGATGTGTCTGGCGGCGGCGATTGAGGCGGCACCGGAGCCTGGCGTGGAGCAGCTGA AGAAGGTGCTTCCGAGGCTTGGGAAGCTTGTGAAGGGAGACGGATTCAAGGCGAAGGCTGCATTGTTAAGCGTGATTGGGAATATCGTGGGAGTTGGAGG CGTGGCGAGTAAGGGAGTTCTGGATTGGTTAGTGCCATGTTTGGTTGAGCTGTTGAGCTGTGAGGATTGGGCTGCGAGGAAAGCTGCGGCGGAGGCGTTG GGGAAGGTAGCTGTTGCCGATAAGGAAGCAGCGAAAGATCACAGAACTTCCTGTTTGAGCTCTCTGGAGAATAGGAGGTTTGATAAGGTCAAAGTTGTTC GAGAGACTATGACCCGTACTCTCGAGTTATGGAAAGATGTTGATGGTGGTTCTGAACAGGAGTTTCCTTCCCGTAATCTCTCCAGATCTTCTTCCGCAGG AGATAATGGTAATGGCGGATACACCAGAAGCTATAACAACGTTGGCTCTAAAACCCCTCCATTGAGGAAATCTTTCCCACCCAATAGGTCCCCTCCATCG GATGCTTCAGTAGTTGTGACCACTGCCAAGAAACAAAGCCCTGCAAAGAGTAATGACAGCAATTCAAGGCCAGCAATGCCACAGAAATTGGACCACAGGA GAACCTCCGCTTGGAAGGTTGAAGTTGCGGTACCACTAGAGAAGAGCTCTGAAGATGACACCAAGATGCGAGAATCAAAGGTACTTCAATCCGGTAGCCC AGAGACTAAGCGGGTGCTGTTTAGCAACAGCCGGGAGGACAAAGTTGACAAACCTCACAGATTCGGTGGGTTCAGATCTGGGTCAAGGGTGGTTCCTTAC AACGATGACGATGATCAAGTGTGTTACACCACCAAAGAAGAAGCTGAGTTGCATAATCCTGCTGAAGATGTGTTTGAGAATCCCAAAGAGATTGAGGATC TGTCCTTAATACGTGCACAGCTTGTTCAGATTGAAAACCAGCAGTCCAATCTTTTGGACCTTCTTCAGAGATTCATGGGCAGCTCTCAGAGCGGGATAAA TTCCCTGGAGTCACGAGTCCACGGATTGGAAATGGCATTGGATGAAATCTCACACGACATGGCTCTATCAAGCGGAAGGGTCGTTCCCAACGCTGAGTTA GCCGAGAACCGATGCTGCAAGCTCCCCGGTACAGACTTCTTGAGTTCCAAGCTATGGAGAAGAACAGATGGTCCCTATTCCTCGCCGAGGTTCGCCTCGC CAGATGCCATTCAATCTCCGAGCAGACGGTATCTCCCGAGTAATGGAAGAAGCTTCCAGCAGAGGTATAACAATTGTGGCATCGTTGCCAACTCATTCGA AGACTTCCACATTGCGGCCAGGAACAGTTCCCTGCGTCAAACGCCAACTAAGCTACTACTTCAAGGCGATACGAGAAGTCCCAGGGCGGCTATATGA
AA sequence Show only first row Show all	>Lus10036675 pacid=23171032 polypeptide=Lus10036675 locus=Lus10036675.g ID=Lus10036675.BGIv1.0 annot-version=v1.0 MLTVEQDLNAQIGAAMCLAAAIEAAPEPGVEQLKKVLPRLGKLVKGDGFKAKAALLSVIGNIVGVGGVASKGVLDWLVPCLVELLSCEDWAARKAAAEAL GKVAVADKEAAKDHRTSCLSSLENRRFDKVKVVRETMTRTLELWKDVDGGSEQEFPSRNLSRSSSAGDNGNGGYTRSYNNVGSKTPPLRKSFPPNRSPPS DASVVVTTAKKQSPAKSNDSNSRPAMPQKLDHRRTSAWKVEVAVPLEKSSEDDTKMRESKVLQSGSPETKRVLFSNSREDKVDKPHRFGGFRSGSRVVPY NDDDDQVCYTTKEEAELHNPAEDVFENPKEIEDLSLIRAQLVQIENQQSNLLDLLQRFMGSSQSGINSLESRVHGLEMALDEISHDMALSSGRVVPNAEL AENRCCKLPGTDFLSSKLWRRTDGPYSSPRFASPDAIQSPSRRYLPSNGRSFQQRYNNCGIVANSFEDFHIAARNSSLRQTPTKLLLQGDTRSPRAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27210			ARM repeat superfamily protein...		Lus10036675 [exp]	0	1
AT1G27210			ARM repeat superfamily protein...		Lus10010730 [exp]	1.0	0.9069
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	12.6	0.8182
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	13.8	0.8627
AT3G01810			unknown protein		Lus10037001 [exp]	14.1	0.8307
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	14.3	0.8464
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	15.0	0.8349
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	16.0	0.8566
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	16.7	0.8474
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	25.4	0.8177
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	26.6	0.8458

Compare expression of checked genes

Lus10036675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.