Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27200 520 / 4e-180 Domain of unknown function (DUF23) (.1) AT5G40720 401 / 1e-133 Domain of unknown function (DUF23) (.1) AT3G27330 398 / 9e-129 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37420 276 / 3e-85 Domain of unknown function (DUF23) (.1) AT5G44670 46 / 6e-05 Domain of unknown function (DUF23) (.1) AT2G33570 43 / 0.0006 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010731 [exp] 941 / 0 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10030815 [exp] 669 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013291 [exp] 657 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10014568 [exp] 397 / 3e-132 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032118 [exp] 395 / 3e-131 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013221 [exp] 310 / 3e-98 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 295 / 2e-93 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 259 / 7e-79 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 154 / 1e-40 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192000 [exp] 600 / 0 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 578 / 0 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 416 / 7e-140 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G252100 [exp] 301 / 1e-94 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G258900 [exp] 44 / 0.0003 AT2G33570 706 / 0.0 Domain of unknown function (DUF23) (.1) Potri.003G156600 [exp] 42 / 0.001 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10036676 pacid=23171182 polypeptide=Lus10036676 locus=Lus10036676.g ID=Lus10036676.BGIv1.0 annot-version=v1.0 ATGGACTCCGATCACCAGCGACGGAAGCGGAAGAGACTCAACAGAGCAAACGAATTCAACCTCGTCATCTCATTCAGATCACTCCCTCTTCCGGCCCGTC ATCCTCCGGTTCACGGGTCTGATCCGACTCCACCACAACCGCCTAAAACAGACCTCTTACCGGACTATCTCCTCCTCATCTTATCCAACAAACTCCGCCG TGTCGAATCCCTCGACTGCGTCTACCACCGTTCGTTGACTTCTTCTGACGACGGCGGCGGTCAAATCTTATTCAGACCCGCGATTTCCGCCGACGACTAC CAGGAGAGCAAGTCAATCGTCAGATGCGAGCTTCCTCCGCCAGGGAACTACTCCGCTGCAACAGTTGATCTACGCCGCCTACGAAATCCGGCGAATCGGA CGGCGGAGGAGTCGTACTACGATGGAGGGGAGCTGGTTTACGAAGCGATTTTGGATTGGGACGCGGTGGTTGTTCTAGCGAAAGGACTGAATCTCAAGCC GAGAAAGGAAGCCGATCCGTCCGGATTCAGATGCCATTTCGGTCTGACCGGTTTCAACAGAAGGTCCGACCGGTCGTTCGTGATCACTACTGAAGCTACT GCAGCTGCTCAGGAAGTTGTTCGTTGCTTGCTTCCAAGAAGCATCCGGATTAACAACAGTGGAAAGCTAGCCGAAGGAATCAGAGTCACTATCAGCCATG TCAGCGAATCGAATTCCGCGGCATTAATGCCATCAGTGGCGAAAATTTACAACCTGAAATCATCGGACATTGGGTTCAGTCAGAAGAAGAAGTATGAGAT TTGTGCCTGTACAATGATGTGGAACCAGGCAGCATTCCTGAAAGAATGGGTGACGTACCACGCCTGGCTTGGCGTGGAACGATGGTTCATCTACGACAAC GATAGTGATGACGGTATTCAAGACATTGTCGAGGAGCTGGAGCTCGATTCATACAATGTCACGAGACATGTATGGCCGTGGCCGAAATCACAAGAAGCAG GGTTCTCGCATTGTGCATTGCGAGCCAAGTACGAATGCGATTGGGTAGGGTTCTTTGACGTGGACGAGTTCTTCTACTTCCCTCGTTACTCTGATTCGTA CCCGACCCCACCGGGGCGAAACTCGTTACGAGCATTGGTGTCGAATTACACCGATTCGCCAATCATAGCGGAGGTCAGAACGACTTGTCGCAGCTTCGGA CCGTCAGGGCTAACGAGGGCCCCACAGCAAGGGGTGACAGTGGGATATACATGTAGGCTTCAGGCGCCAGAGAGGCACAAGTCGTTTGTTCGTCCCGAGT TGCTCGATTCGACGCTTTTGAACATAATACATCACTTCAAGCTGAAGGAAGGGTACGAGAGTGTCAACGTGGGCGAAACTACTGCTGTGATTAACCATTA CAAGTACCAGGTTTGGGATACGTTCAAGGCTAAATTCTTCAGGAGGGTTTCTACTTATGTTGCTAACTGGCGAGACGATCATAACAAAGGGTCGAAGGAT CGAGCTCCCGGGCTTGGGACCGAGGCTGTCGAGCCCGAGGATTGGCGGCTGAGATTCTGTGAGGTTTGGGATACTGGTTTGAAGGACTTTGTGCTTGATA CGTTTGCTGATGTTGCTACTGGGTTCCTTCCTTGGGAGAAGAAGTCTTCTGGTATTTGA
AA sequence Show only first row Show all	>Lus10036676 pacid=23171182 polypeptide=Lus10036676 locus=Lus10036676.g ID=Lus10036676.BGIv1.0 annot-version=v1.0 MDSDHQRRKRKRLNRANEFNLVISFRSLPLPARHPPVHGSDPTPPQPPKTDLLPDYLLLILSNKLRRVESLDCVYHRSLTSSDDGGGQILFRPAISADDY QESKSIVRCELPPPGNYSAATVDLRRLRNPANRTAEESYYDGGELVYEAILDWDAVVVLAKGLNLKPRKEADPSGFRCHFGLTGFNRRSDRSFVITTEAT AAAQEVVRCLLPRSIRINNSGKLAEGIRVTISHVSESNSAALMPSVAKIYNLKSSDIGFSQKKKYEICACTMMWNQAAFLKEWVTYHAWLGVERWFIYDN DSDDGIQDIVEELELDSYNVTRHVWPWPKSQEAGFSHCALRAKYECDWVGFFDVDEFFYFPRYSDSYPTPPGRNSLRALVSNYTDSPIIAEVRTTCRSFG PSGLTRAPQQGVTVGYTCRLQAPERHKSFVRPELLDSTLLNIIHHFKLKEGYESVNVGETTAVINHYKYQVWDTFKAKFFRRVSTYVANWRDDHNKGSKD RAPGLGTEAVEPEDWRLRFCEVWDTGLKDFVLDTFADVATGFLPWEKKSSGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	0	1
AT4G35320			unknown protein		Lus10022985 [exp]	2.0	0.8789
AT1G27200			Domain of unknown function (DU...		Lus10010731 [exp]	2.6	0.8156
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	2.8	0.8753
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	3.5	0.8495
					Lus10024338 [exp]	6.9	0.8031
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	9.2	0.8308
					Lus10042355 [exp]	11.4	0.8289
AT4G35320			unknown protein		Lus10001621 [exp]	13.4	0.8203
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	14.5	0.7521
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10022947 [exp]	14.8	0.7917

Compare expression of checked genes

Lus10036676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.