Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59840 288 / 2e-97 CCB4 cofactor assembly of complex C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010732 [exp] 331 / 4e-115 AT1G59840 282 / 1e-95 cofactor assembly of complex C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191900 [exp] 321 / 2e-110 AT1G59840 352 / 2e-122 cofactor assembly of complex C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF11152 [flax] [poplar] CCB2_CCB4 Cofactor assembly of complex C subunit B, CCB2/CCB4
Representative CDS sequence Show only first row Show all	>Lus10036677 pacid=23171099 polypeptide=Lus10036677 locus=Lus10036677.g ID=Lus10036677.BGIv1.0 annot-version=v1.0 ATGGTGCCACTCCTTGGAGCTTTAGTTCCCACCGGCAACGGCACCGCCGCCTACCACCTCGACATGTTCAAGCTTCCACCTCAAATTCGCAGAGGACTGA AGCCGAAGCGAGATTTCGTCCCTGATTTGGTGTCCAGCAACGACGAAGCATTCAGAAGCTTGCCGATATACGTCGGAGGTGTTTCTCTCGTGTCCGTCCT CGTTAATCGCGCAGTTTCCGGCATAGCTCCCGTTGCCGACGCTAGCAGCTCTCAATCAAGGGCGGATTTATTGACACTCGGATTGGCAGTAACTAGTATA TTGACTGGTTTGGTATGGCTGACTATCAAACCAAAGTCTATCTCAGTGGTGGATCCACAAGGTGTGGAATGTCGGATGATATCTCCTGACCTACCAGACC CTGTAGTTGCAGAGTTGTTATGGATATGGGAGTCTCTATCATCGGCAACATGCTGCAGGTCTCTAGTAGTTGTTTATGATCGTAGATGTATTTTCCAAAT TGGAGTTGCAGCAGAGTCTTCTAATGGTGAAGCACAGTCCGTGGATGCTGCTATGTTGGCCAAAGGATCAGTCTGTCAAGGTGTTTTGAAGTCTGGAAGT CAAAGCTATTTGGCTAACCTATCTCTATATCCTGGGAGGTCACAGCTTCCATTCTTACCTTCCAACACGCAGGCAGTGATCTTGCAGCCTCTCGGAGACA AAGGCATTCTGATAATTGGAGGTGACATGATTAGAGGCTTCACAAATTCTGACCAGGGATGGGTTTCTTACCTTGGAGAAAAACTGGACGCAACAATGGC AAAACATGCAGCGATCCAGGACACGGTCTGA
AA sequence Show only first row Show all	>Lus10036677 pacid=23171099 polypeptide=Lus10036677 locus=Lus10036677.g ID=Lus10036677.BGIv1.0 annot-version=v1.0 MVPLLGALVPTGNGTAAYHLDMFKLPPQIRRGLKPKRDFVPDLVSSNDEAFRSLPIYVGGVSLVSVLVNRAVSGIAPVADASSSQSRADLLTLGLAVTSI LTGLVWLTIKPKSISVVDPQGVECRMISPDLPDPVVAELLWIWESLSSATCCRSLVVVYDRRCIFQIGVAAESSNGEAQSVDAAMLAKGSVCQGVLKSGS QSYLANLSLYPGRSQLPFLPSNTQAVILQPLGDKGILIIGGDMIRGFTNSDQGWVSYLGEKLDATMAKHAAIQDTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	0	1
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	1.0	0.9139
AT3G05350			Metallopeptidase M24 family pr...		Lus10029923 [exp]	2.0	0.8941
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	2.8	0.9026
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	4.6	0.8954
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10038236 [exp]	6.5	0.8718
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	10.7	0.8939
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10042143 [exp]	11.0	0.8526
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10014839 [exp]	11.7	0.8709
AT3G61960			Protein kinase superfamily pro...		Lus10005135 [exp]	14.5	0.8685
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	14.8	0.8682

Compare expression of checked genes

Lus10036677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.