Plant FIBer expression Database

Lus10036679 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69980 176 / 9e-56 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010734
[exp]
319 / 1e-110 AT1G69980 159 / 1e-47 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G191700
[exp]
177 / 2e-56 AT1G69980 167 / 1e-52 unknown protein
Potri.010G039466
[exp]
175 / 2e-55 AT1G69980 156 / 4e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10036679 pacid=23171157 polypeptide=Lus10036679 locus=Lus10036679.g ID=Lus10036679.BGIv1.0 annot-version=v1.0
ATGATGATTTGGAGAAATCCTTTGCTCCTGCTGTTCTTCTTCCCCTTCTCTGCAATCGCAGAGCTTGAGTCATCGTCTCCGAATCACGAAATCCGGAGCA
ATGGTGGATTCCGGCGAAGAGTTTTGCTCGGATTCAAGGAAACGCCCAGCGGTAGTAACGTTACCTTCAATTGCGCTCCTTCAGGCGCCTGCGTTCCCTG
CCAGTACTCAGAGAAGAGTGAAGTGAAGTACAGATGCAGCGAGACTGGATATCGTATCCCGTTGAAATGTAAGGAGATTAAAGACGGTGTGAACCTTGAA
AAGCAAGGGAAATCGAAAAAGAGTCGATCTGATATGGAAGCATCTTCGGGGGATGGGGTTCAGGAGACGTCGGATGGAGGTAGAAATTTAGAAGAGGATC
CAGCAAAACCAAAAGCCGTATCACAGGATTACATCACTTACAGAAGTTGTATACCACCTGTTGAGGAAGAGAAGGTTTCAGTTCTTGGTTTTGAGGGGAT
CATGTTGTTCTTGTTGGCAGTAAGTGGTTCAGTCGTCTACTTTCGGAAGAAGCAGACATCGACAATGCCAGGAGCCGGAGGAGGGGCCGGTAGGATCCAA
ATGAACTCCAGGTTTTAA
AA sequence
>Lus10036679 pacid=23171157 polypeptide=Lus10036679 locus=Lus10036679.g ID=Lus10036679.BGIv1.0 annot-version=v1.0
MMIWRNPLLLLFFFPFSAIAELESSSPNHEIRSNGGFRRRVLLGFKETPSGSNVTFNCAPSGACVPCQYSEKSEVKYRCSETGYRIPLKCKEIKDGVNLE
KQGKSKKSRSDMEASSGDGVQETSDGGRNLEEDPAKPKAVSQDYITYRSCIPPVEEEKVSVLGFEGIMLFLLAVSGSVVYFRKKQTSTMPGAGGGAGRIQ
MNSRF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G69980 unknown protein Lus10036679
[exp]
0 1
AT1G69980 unknown protein Lus10010734
[exp]
1.7 0.8860
AT3G57090 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide ... Lus10009706
[exp]
2.2 0.8713
AT3G45020 Ribosomal L18p/L5e family prot... Lus10021433
[exp]
2.4 0.8869
AT2G37550 ASP1, AGD7 yeast pde1 suppressor 1, ARF-G... Lus10003977
[exp]
3.5 0.8867
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10022525
[exp]
6.5 0.8656
AT2G06530 VPS2.1 SNF7 family protein (.1) Lus10015642
[exp]
6.6 0.8722
AT2G43760 molybdopterin biosynthesis Moa... Lus10026805
[exp]
6.9 0.8660
AT5G22360 ATVAMP714 vesicle-associated membrane pr... Lus10043394
[exp]
7.2 0.8357
AT4G39235 unknown protein Lus10004160
[exp]
10.2 0.8329
AT5G42300 UBL5 ubiquitin-like protein 5 (.1) Lus10023188
[exp]
10.5 0.8411

Lus10036679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.