Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017226 [exp] 60 / 1e-09 ND 44 / 1e-04 Lus10013907 [exp] 59 / 2e-09 ND / Lus10035796 [exp] 53 / 3e-07 ND 45 / 1e-04 Lus10004929 [exp] 47 / 2e-05 ND / Lus10040816 [exp] 44 / 0.0001 ND / Lus10040838 [exp] 42 / 0.0007 AT3G23950 57 / 2e-08 F-box family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036680 pacid=23171334 polypeptide=Lus10036680 locus=Lus10036680.g ID=Lus10036680.BGIv1.0 annot-version=v1.0 ATGCTGGGCGTGGATTCGAGGTTTATAACTGTGCCGATATTCCTTCCAACGTTAGCTTGTGAGCCCTGCTATTGGATCGAGGACTTGGGAGATGGTGAAT CCCCTGTTTATTACGAGTATCGGTTCCGAGTGCTGCGTATGCATCACGTAAGTACCAACGGCATGCCGAGACTCGACGTGTATTGCTCCGAATCCCCTGG GAAATGGACGAGCCATGTTCTTGGTGATGAAGTTAAGAGAATGCTCCCTTACCAGAACCCCTTGGAAATCCGGGTGTTCAAAGGGGGAAGCAGCAGAGCC ACCTGGTCCAACAACGGTGTTTGGATCTCACAGGGATACTTGCACATAGTAAGACTACTCTCGTCAACCTCCTTCAGTGTTTGGAGACTTCAACTAGGAG GAGGATTTGAGTGGAAAAAACAGTGTGGAGTAACAATGGATACCCTAAGGTGGTGCCGTGATAACAAAAGGGCTTATGAAGATAGCTTTAGGATGGATCT TTATAGCAGATGGCCACGCGCGGGACGTCTCTTTGGGAAGTTGTGTGGCAAATGTGACGGTGGGAAGATGGTTCAGGACAGTGAGTTGAAGTTGGAGTCA GTCATCGGATTACACCCCGAGGATTCTCAAGTCGTTTACCTCAAATTCAATCGACCGAGTACCCCACGTAGAAAGAGACATGACTGTCCGGATGATGAAT TAGGTTTTGTCTGCAATCTTCGCACGATGACACTCGAGGTATTTGGTGATGTACATCAAATCCATTCAGGAGCATGGTGGACATCACAGTTCAAAAAACC AAGATGGTCCTACTGGCCTGCCCAAATTCGAAACTTTAGTAAGTTGGGAGGTTTATACAATGGCCAGTACCTCTCTATCAATGCTCCAGCAACTGCTGCC ATCAACTACCCGCCGGGATGCTCTCTGCCGCCCCCGCCGTCTACTGAATCCAATGTCAAATATCAACCTGTTGATGTTCTACGTTCATATTCCCTTCCTT CGAAATTGAAGGGGATAGTTGATGATGTGAAGAAACTCGGCCACCGAGTTTATTTCGATTACACTATGCTGTTGTGTCAAAATCTTGATGAATCTGTTGA AAACTATTTCAAACTAGATGATGGAACAATGCGGAAGCAGTGGCTAATGGAGCAATCACAAGCAACAGTTGCTATGCCACACAAATTCAAATGGACCTTG CCTAGCGGCTCCGTTATGCGGGTTATCAGAGACCTTGGTGTTGTTCAAGATCCTACGTTTTACGATCCTTCTTGCTAG
AA sequence Show only first row Show all	>Lus10036680 pacid=23171334 polypeptide=Lus10036680 locus=Lus10036680.g ID=Lus10036680.BGIv1.0 annot-version=v1.0 MLGVDSRFITVPIFLPTLACEPCYWIEDLGDGESPVYYEYRFRVLRMHHVSTNGMPRLDVYCSESPGKWTSHVLGDEVKRMLPYQNPLEIRVFKGGSSRA TWSNNGVWISQGYLHIVRLLSSTSFSVWRLQLGGGFEWKKQCGVTMDTLRWCRDNKRAYEDSFRMDLYSRWPRAGRLFGKLCGKCDGGKMVQDSELKLES VIGLHPEDSQVVYLKFNRPSTPRRKRHDCPDDELGFVCNLRTMTLEVFGDVHQIHSGAWWTSQFKKPRWSYWPAQIRNFSKLGGLYNGQYLSINAPATAA INYPPGCSLPPPPSTESNVKYQPVDVLRSYSLPSKLKGIVDDVKKLGHRVYFDYTMLLCQNLDESVENYFKLDDGTMRKQWLMEQSQATVAMPHKFKWTL PSGSVMRVIRDLGVVQDPTFYDPSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036680 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	10.8	0.7756
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	11.6	0.7855
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	19.6	0.7424
AT2G19090			Protein of unknown function (D...		Lus10015534 [exp]	19.6	0.7288
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10025294 [exp]	22.8	0.7364
					Lus10022719 [exp]	25.2	0.7047
AT5G14210			Leucine-rich repeat protein ki...		Lus10041589 [exp]	33.2	0.6124
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	42.7	0.7161
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	43.8	0.7155
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	46.1	0.6611

Compare expression of checked genes

Lus10036680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.