Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13050 211 / 1e-68 5-FCL 5-formyltetrahydrofolate cycloligase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010736 [exp] 337 / 1e-117 AT5G13050 276 / 8e-93 5-formyltetrahydrofolate cycloligase (.1.2) Lus10004254 [exp] 216 / 1e-69 AT5G13050 296 / 1e-100 5-formyltetrahydrofolate cycloligase (.1.2) Lus10042162 [exp] 213 / 2e-68 AT5G13050 297 / 4e-100 5-formyltetrahydrofolate cycloligase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072800 [exp] 209 / 2e-67 AT5G13050 309 / 6e-106 5-formyltetrahydrofolate cycloligase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036681 pacid=23171251 polypeptide=Lus10036681 locus=Lus10036681.g ID=Lus10036681.BGIv1.0 annot-version=v1.0 ATGGACCCGGCTGAGCGAGCTCGTCAAGGGTTGGATGAGGCGATTCAGGGGATTGTGTTGGAAGCGCAGTGGTTCAAGGCTAGCAAGAGCTTGTGTGCTT ATATAAGCTGTCCTTCTCTACGAGAAGTTGATACGGCGAGAATTGTCTCAGAAGCTCTAACTAATCCGTACCCAGGGAACAGGAAAAAGGTGTATCTTCC ACGGGTAGAAGACAGGAATAGCAACATGAAAATGCTGAGGGTATCCGACGTTGATGACCTGATCTTAAACTTGATGAACATATTGGAGCCTTTACTAGAT TTGGATGGGAATCAACGTGAAGATGTTCTGCTAGCAAGGGAGCCACTTGCCCTCATCATTATACCTGGTAATTACACTTCTTCTTCTTCGAGAACGATAA AAAACGAGTACTTACCTTTTGCAACATTTACGGGGCTCTGTTCCTCTATCTGTTACTATGACGTCTTCCTGAAGAAGTACCAGCCCCTTGCAAAGGAAAT GAACTGGAAGCCTCCCTTACATGTTGCATTAGCATACTCCGTTCAGATCACAGACGAAGGATCTGTCCCTATTACCCCAGATGATGTTCCAGTGGATGGC ATCGTCTCCCCTTCTGGTTTCGTTCCCGTCAGTCCCGCAGCTCGCTGGCACTAG
AA sequence Show only first row Show all	>Lus10036681 pacid=23171251 polypeptide=Lus10036681 locus=Lus10036681.g ID=Lus10036681.BGIv1.0 annot-version=v1.0 MDPAERARQGLDEAIQGIVLEAQWFKASKSLCAYISCPSLREVDTARIVSEALTNPYPGNRKKVYLPRVEDRNSNMKMLRVSDVDDLILNLMNILEPLLD LDGNQREDVLLAREPLALIIIPGNYTSSSSRTIKNEYLPFATFTGLCSSICYYDVFLKKYQPLAKEMNWKPPLHVALAYSVQITDEGSVPITPDDVPVDG IVSPSGFVPVSPAARWH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10036681 [exp]	0	1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	35.3	0.5888
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10040414 [exp]	41.4	0.6182
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10007987 [exp]	72.9	0.5845
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10020763 [exp]	76.7	0.5807
AT5G11810			unknown protein		Lus10003649 [exp]	90.9	0.5878
					Lus10022247 [exp]	103.6	0.5329
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	124.4	0.5336
AT2G35658			unknown protein		Lus10000594 [exp]	127.0	0.5451
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	136.7	0.5453
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	151.4	0.5459

Compare expression of checked genes

Lus10036681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.