Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59820 1959 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G25610 984 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 982 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G68710 981 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 977 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G17500 972 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 961 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 940 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 934 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 933 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013286 [exp] 2294 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10030809 [exp] 2265 / 0 AT1G59820 2006 / 0.0 aminophospholipid ATPase 3 (.1) Lus10019152 [exp] 1013 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 971 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 959 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 949 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 943 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 940 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 924 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G039900 [exp] 2092 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 2069 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G111200 [exp] 991 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 990 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 985 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 944 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 933 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 922 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 868 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G109200 [exp] 685 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10036682 pacid=23171166 polypeptide=Lus10036682 locus=Lus10036682.g ID=Lus10036682.BGIv1.0 annot-version=v1.0 ATGACCAGCGGCGGCGGCGGGTGGGAAAAGGTTAGGTCTGCGAGAGGAGGGAGATTGTCCCGAGAAACGAGTCTGACAGGTCGAACGTCGAGGACGGTTA GGCTCGGCCGCGTACGGCCGCAGGCTCCTGGTTTCCGTACAATCTACTGCAATGATCGTGAGGCTAACCTCCCCGTCCGATTCAAGGGGAACTCTATATC GACTACAAAGTATAACTTCTTAACCTTTGTACCAAAGGGGTTGTTTGAACAGTTCAGACGGGTGGCCAACTGCTATTTTCTCATGATTTCTATTCTCTCG ATGACGCCTATCAGTCCTGTGAATCCGGTGACAAACGTTGTTCCCCTTAGCATGGTACTTTTTGTCTCTCTTATTAAGGAGGCATTCGAGGATTGGAAGC GCTTGCAGAATGATATGGCGATAAACAATAATCCGGTAGATGTGCTGCATGATCAACGATGGGAAACTATTTCTTGGAAGAAGTTGCAGGTTGGAGACAT AGTCAGGATTAAGCAGGACGGATTCTTTCCTGCAGATTTGCTTTTCCTAGCTAGTAGTAATGCAGACGGTGTCTCTTATATTGAGACGTCAAACTTGGAT GGTGAAACAAACTTGAAGATAAGAAAAGCTTTGGAAAGGACATGGGATTATTTGACTCCAGAGAAAGCCGCTGAATTTAAAGGTGAAGTGCAGTGTGAGC AGCCAAACAACTCATTGTATACTTTCACTGGCAATCTTATCATCGAAAACCAAACACTTCCACTTTCTCCGAACCAACTTTTGTTGAGAGGCTGCGGTCT TAGAAATACGGAGTACATCGTTGGGGTGGTTATCTTTACAGGTCATGAAACAAAGGTTATGATGAATTCCATGAACGTCCCCTCCAAAAGGAGTACATTG GAGAGAAAACTTGACAAACTTATCCTCGCTCTTTTTGGAACTCTCTTCACTATGTGCCTGATCGGAGCCATGGGAAGTGGTATATTCATAAGCAGTGACT ATTACTACCTGGAGCTTGCCAGAGGAGTAGGATTGGAGTTTAACCCTAGCAGCCGTATTTCGGTTGCAACTTTGACTTTGTTTACTTTGATCACTCTATA CTCGACAATCATTCCTATCTCTTTATATGTCTCTATTGAGATGGTCAAGTTTATTCAGTGTACTCAATTCATAAACAAGGATTTGCACATGTATCATGTT GAAACCAACACGCCGGCATTGGCTCGAACTTCTAATTTGAATGAGGAACTTGGACAGGTGGAATATATATTTTCTGACAAAACTGGAACTTTAACACGAA ATTTAATGGAGTTCTTTAAGTGTTCAATTGGAGGAGTGGTTTATGGTACTGGCTTCACCGAGATAGAGAGGGGCGGGGCACAAAGGGACGGTGCCAAACT TCCAGAAGCGCCAAGATCGCCCCATGCAGTACGTGAAAAAGGATTCAATTTTGATGATTCTAGGATCATGCTAGGGGCTTGGAGGAATGAGTCTAATCCT GATATATGCAAGGAATTTTTCAGATGCCTCGCGATATGCCACACTGTACTCACAGAAGGCGAAGAGTCCCCTGACAAGATCACCTACCAAGCTGCGTCGC CTGATGAGGCTGCTCTTGTTACTGCTGCAAAGAACTTTGGATTCTTCTTTTACAGGCGTACACCAACTATGATCTATGTTCGTGAATCTCATGTAGAGAA GATGGGGAACATTACGGATATTCCTTATGAGATTTTGAATGTTCTGGAATTCAACAGCACGAGGAAGCGACAGTCTGTGGTTTGTAGGTACCCTGATGGT AGACTCGTACTGTACTGCAAGGGTGCAGATACTGTAATTTATGAAAGATTGGCTGATGGAAATGAGGGTCTTAAGAAGATAACTCGGGAACAATTGGAAC AATTTGGATCAGCTGGATTGCGTACTCTCTGCCTTGCCTATAAAGATTTACACCCAGAAACATATGAAAGCTGGAATGAAAAGTTTATCCAAGCCAAATC TTCTCTGAGAGATCGCGAAAAGAAGCTGGATGAGGTCGCAGAACTTATAGAAAAGGATCTCATCTTTATTGGGGCTACAGCTATAGAAGACAAGCTTCAA GAAGGAGTACCAACTTGTATTGAGACTCTTTCTAGAGCTGGAATCAAGATTTGGGTTCTGACAGGGGACAAGTTGGAAACTGCAATAAATATTGCTTATG CTTGCAACTTGATTAACAACCAGATGAAACAATTTATCATAAGTTCCGAAACTGATGCAATAAGAGAAGTGGAAGAGAAGGGTGACCAGGTAGAAATTGC ACGGTTTATGAAGGAAGAAGTCAAGAGAGAGCTCACAAGGTGTCTCGAAGAAGCACAACACTCTTTGTGCACTCTACCTCGACCAAAGTTAGCGCTTATT ATAGATGGAAAGTGTTTGATGTATGCATTGGACCCAAGCTTACGCGTGATGCTGCTTAATTTGTGTCTGAACTGCAGTTCAGTGGTTTGTTGTCGAGTTT CTCCTTTGCAGAAAGCTCAGGTTACAAGCCTGGTAAAGAAAGGTGCCCAGAAGATAACGCTTAGTATTGGGGATGGTGCTAATGATGTTAGCATGATTCA AGCTGCTCATATAGGTGTTGGGATAAGCGGATTGGAGGGTATGCAAGCAGTCATGGCTAGTGATTTCGCGATTGCTCAGTTTCGATATCTCACAGATTTA CTTCTTGTACATGGTCGGTGGTCGTACCTCAGGATATGCAAGGTGATATGTTACTTCTTTTACAAGAACCTTACATTCACTCTAACGCAATTCTGGTTCA CCTTTCATACCGGCTTCTCCGGACAAAGGTTCTACGATGATTGGTTTCAGTCATTATACAATGTCATCTTTACAGCTCTTCCAGTGATCATCGTTGGCCT CTTCGACAAGGCAAGAGGGAATAAGAAACATGTTCGTCATGTTGAATTATGTCTTTTACAGGATGTGAGTTCGGCATTGTCCAAGAAGTACCCTGAACTG TACAAGGAAGGGATAAAAAACATGTTCTTCAAATGGCGAGTTGTGTGGACTTGGGCGTTTTTCTCCGTCTACCAGTCTCTGGTCTTCTATATCTTCGTCA CACTTTCCGGTGCCAGTGGTAAAAATTCGTCAGGAAGGATGTTCGGACTGTGGGATGTCAGCACAATGGCGTTCACTTGTGTTGTAATCACTGTCAATTT ACGGCTTCTCATGATGTGCAATTCGATCACAAGATGGCATTATATTAGCGTCGGAGGCAGTATTCTGGCATGGTTTGGTTTCATCCTTATATATTCACTC CTCCGGGAGAATGTTCTTTACGTCATTTATGTGCTGATGGGTACATTCTATTTCTACCTCACAATTATTCTTGTGCCCATTGTTGCTCTTCTGGGAGACT TCATCTATCAAGGGGTGGAGAGGTGGTTCTTCCCATACGATTATCAGGTGGTTCAAGAAATTCACAGGAACGATCCCGACGACAGCTCCAGGTCCGGACT ACTGGAGATTGAGAACCGTCTCACCCCACAAGAGGAAAGAAGCTACGGCGTAGCTCAACTACCAAGGGAGATATCCAAACACACCGGCTTCGCTTTCGAT TCGCCTGGTTACGAGTCATTTTTCGCCGCCCAGCTCGGTATACATGCTCCCCACAAGGCATGGGATGTCGCCAAAAGAGCGAGTGTGCGGGGTAAGCACA AGGCATCAAAGAAACATTAA
AA sequence Show only first row Show all	>Lus10036682 pacid=23171166 polypeptide=Lus10036682 locus=Lus10036682.g ID=Lus10036682.BGIv1.0 annot-version=v1.0 MTSGGGGWEKVRSARGGRLSRETSLTGRTSRTVRLGRVRPQAPGFRTIYCNDREANLPVRFKGNSISTTKYNFLTFVPKGLFEQFRRVANCYFLMISILS MTPISPVNPVTNVVPLSMVLFVSLIKEAFEDWKRLQNDMAINNNPVDVLHDQRWETISWKKLQVGDIVRIKQDGFFPADLLFLASSNADGVSYIETSNLD GETNLKIRKALERTWDYLTPEKAAEFKGEVQCEQPNNSLYTFTGNLIIENQTLPLSPNQLLLRGCGLRNTEYIVGVVIFTGHETKVMMNSMNVPSKRSTL ERKLDKLILALFGTLFTMCLIGAMGSGIFISSDYYYLELARGVGLEFNPSSRISVATLTLFTLITLYSTIIPISLYVSIEMVKFIQCTQFINKDLHMYHV ETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGVVYGTGFTEIERGGAQRDGAKLPEAPRSPHAVREKGFNFDDSRIMLGAWRNESNP DICKEFFRCLAICHTVLTEGEESPDKITYQAASPDEAALVTAAKNFGFFFYRRTPTMIYVRESHVEKMGNITDIPYEILNVLEFNSTRKRQSVVCRYPDG RLVLYCKGADTVIYERLADGNEGLKKITREQLEQFGSAGLRTLCLAYKDLHPETYESWNEKFIQAKSSLRDREKKLDEVAELIEKDLIFIGATAIEDKLQ EGVPTCIETLSRAGIKIWVLTGDKLETAINIAYACNLINNQMKQFIISSETDAIREVEEKGDQVEIARFMKEEVKRELTRCLEEAQHSLCTLPRPKLALI IDGKCLMYALDPSLRVMLLNLCLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHIGVGISGLEGMQAVMASDFAIAQFRYLTDL LLVHGRWSYLRICKVICYFFYKNLTFTLTQFWFTFHTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKARGNKKHVRHVELCLLQDVSSALSKKYPEL YKEGIKNMFFKWRVVWTWAFFSVYQSLVFYIFVTLSGASGKNSSGRMFGLWDVSTMAFTCVVITVNLRLLMMCNSITRWHYISVGGSILAWFGFILIYSL LRENVLYVIYVLMGTFYFYLTIILVPIVALLGDFIYQGVERWFFPYDYQVVQEIHRNDPDDSSRSGLLEIENRLTPQEERSYGVAQLPREISKHTGFAFD SPGYESFFAAQLGIHAPHKAWDVAKRASVRGKHKASKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	0	1
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10016740 [exp]	2.4	0.8397
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043339 [exp]	2.6	0.8166
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	3.7	0.8466
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	4.2	0.8222
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	5.0	0.8322
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	8.9	0.8097
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	9.5	0.8394
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	10.2	0.8005
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	10.4	0.8096
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	11.5	0.8341

Compare expression of checked genes

Lus10036682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.