Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59650 562 / 0 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 541 / 0 Protein of unknown function (DUF1336) (.1) AT3G29180 334 / 3e-109 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 317 / 1e-102 Protein of unknown function (DUF1336) (.1) AT1G13970 303 / 2e-97 Protein of unknown function (DUF1336) (.1) AT5G35180 49 / 6e-06 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT4G19040 48 / 1e-05 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G24990 44 / 0.0001 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010740 [exp] 834 / 0 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 415 / 2e-140 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 410 / 1e-138 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10026633 [exp] 316 / 2e-102 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 313 / 1e-101 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 298 / 1e-95 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10000174 [exp] 156 / 2e-45 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 142 / 2e-38 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019068 [exp] 59 / 5e-09 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040100 [exp] 572 / 0 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G190500 [exp] 555 / 0 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 447 / 4e-154 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 331 / 9e-108 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.010G163100 [exp] 317 / 1e-102 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 44 / 0.0002 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G014234 [exp] 43 / 0.0003 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.003G100600 [exp] 43 / 0.0005 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10036683 pacid=23170990 polypeptide=Lus10036683 locus=Lus10036683.g ID=Lus10036683.BGIv1.0 annot-version=v1.0 ATGGGTGGTTGTGTGTCGACGCCGACAGCATGCGTCGGCGGCGAGAGATTGAGGTCGTCGGAGAAGAAGAAAGCTGGTAGAAGAAAGAGGAAGAAGTTAT TACCAACCGCTCATTACAAGAAGTCTTCCAGATTACCCGACGCATCGTCGCTGGATAATCATCATCAGACGGTTACAGCCGCTTCTGCTGCTGTGTCGTC TGATCATCTCCCTCCTCGCACTTCTTTCAATCAAATCAACCCTTCTTTCCAAGCTGCAAGCATTGAGGAGGCATGGTTTGACACAATAGCAGCATTGGAC TCTGATGGTGATGATGATTTCCAAAGTGTTTCAGATGATATCTTGTCTCAAAATGGGTCTGAAGGTGTCCGATTGTCGAATGCTACGCTTCATGGTTCCT TACAGCCAATTCAATTGAAGCAACAACCGGTGTTCCTCGATGAGATCTCGGTGGAGGAAAACGATGATAAGGAGGAAGGGCTGTTGGATAACTGTGGTAT CCTTCCTGGTAACTGCTTGCCTTGCCTTGCTTCGACCACCGTTCCACCGGTGGAGAAGAGGCGATCGCTTAGCTCGAGCCCTCCTAGCGCTAGGAAGAGA TCTGCTAGCAAAATGTCATTCAAGTGGAAGGAAGGACATGTCAATGTCAATAACCCCTTGTTCTTTTCGAAGATGGTTCTACAGAGGCCAATAGCCGGAT GTCAAGTCCCCTTCTGCCCTATTGATAAGAAAATGCTTGATTGTTGGTCTCACATCGATCCAGGCAGTTTCAAAGTTCGTGCTCCGAATTACTTCAGAGA CAAGAAGAAGGAGCTTGCTCCCAGCTACGCTGCATACTATCCGTTCGGAGTTGATGTGTTCTTATCTCCTCGAAAATTCGATCACATTGCTCAGTTTGTG GAGCTTCCTGTAACTAACACTTCAGGGAAGCTCCCATCTATCCTTGTTGTAAATGTTCAAATTCCATTGTATCCTGCCGCAATTTTTCAAGGTGAAACTG ATGGAGAAGGAATGAGCATTGTGCTGTATTTCAAACTTAATGACAATTACTTGAAGGAACTTCCAACTCATTTCCAAGACAGTATTAGACGGTTAATCGA TGATGAGGTGGAGAAAGTGAGGGGCTTTGCTGTGGATACGATCGTGCCCTTTCGAGAGAGGTTGAAGATCTTGGGGCGCGTTGTGAATGTTGAAGATCTC CGTTTGAATGGTCCTGAGAGGAAACTTATGCAAGCTTACAACGAAAAGCCTGTCCTTTCGCGTCCTCAGCATCAATTCTATTCAGGCGAAAACTACTTCG AGATTGACATAGACATGCATAGGTTCAGTTACATATCTAGAAAAGGTTTCGAAGCGTTCCTTGACAGACTCAAGATCTGCGTTCTTGATGGAAACAAGGC TGAAGAGCTGCCAGAGCAGATCTTATGCTGCATAAGGCTAAACGGGATCGACTACATGAACTATCACCAGCTAGGGATGAATCAAGATCCTCTTGATTTC GTAAGTGCTTAG
AA sequence Show only first row Show all	>Lus10036683 pacid=23170990 polypeptide=Lus10036683 locus=Lus10036683.g ID=Lus10036683.BGIv1.0 annot-version=v1.0 MGGCVSTPTACVGGERLRSSEKKKAGRRKRKKLLPTAHYKKSSRLPDASSLDNHHQTVTAASAAVSSDHLPPRTSFNQINPSFQAASIEEAWFDTIAALD SDGDDDFQSVSDDILSQNGSEGVRLSNATLHGSLQPIQLKQQPVFLDEISVEENDDKEEGLLDNCGILPGNCLPCLASTTVPPVEKRRSLSSSPPSARKR SASKMSFKWKEGHVNVNNPLFFSKMVLQRPIAGCQVPFCPIDKKMLDCWSHIDPGSFKVRAPNYFRDKKKELAPSYAAYYPFGVDVFLSPRKFDHIAQFV ELPVTNTSGKLPSILVVNVQIPLYPAAIFQGETDGEGMSIVLYFKLNDNYLKELPTHFQDSIRRLIDDEVEKVRGFAVDTIVPFRERLKILGRVVNVEDL RLNGPERKLMQAYNEKPVLSRPQHQFYSGENYFEIDIDMHRFSYISRKGFEAFLDRLKICVLDGNKAEELPEQILCCIRLNGIDYMNYHQLGMNQDPLDF VSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59650		CW14	Protein of unknown function (D...		Lus10036683 [exp]	0	1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10011280 [exp]	15.4	0.6825
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10039598 [exp]	20.4	0.7722
AT1G54460			TPX2 (targeting protein for Xk...		Lus10005533 [exp]	64.7	0.6554
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	91.2	0.6806
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	116.3	0.6973
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	156.7	0.6653
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	194.4	0.6772
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10018776 [exp]	249.0	0.6555
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	256.9	0.6590

Compare expression of checked genes

Lus10036683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.