Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 543 / 0 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 521 / 0 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 513 / 2e-179 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11430 475 / 3e-164 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 468 / 2e-161 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 417 / 1e-140 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G02390 333 / 2e-108 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 317 / 2e-102 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT3G11325 296 / 6e-96 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010741 [exp] 956 / 0 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 545 / 0 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 476 / 6e-165 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010934 [exp] 439 / 2e-149 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 435 / 2e-148 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 420 / 1e-141 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10004833 [exp] 407 / 1e-138 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10001449 [exp] 340 / 2e-111 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10002421 [exp] 337 / 4e-110 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063900 [exp] 795 / 0 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 789 / 0 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 584 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 577 / 0 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 518 / 0 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.010G201200 [exp] 473 / 1e-163 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 468 / 8e-162 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.005G202200 [exp] 462 / 7e-159 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 372 / 2e-123 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036684 pacid=23171303 polypeptide=Lus10036684 locus=Lus10036684.g ID=Lus10036684.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGGCAAGATTCTCCACCGTGGAGAAATGCGACTCCACGGACCGCGAAAGCCACACGGTGGTAGCCGACATGGACGGCACACTCCTCATCG GCCGGAGCTCATTCCCTTACTTTGCCTTGGTGGCATTCGAGGCAGGCGGAATCCTCCGCCTCCTCCTCCTACTCTTGCTCTCCCCGCTCGCCGGCCTCCT CTACTACTTCGTCTCCGAAAAGGCTGGCATCCAAGTCCTCATCTTCGCCACCTTCGCCGGAATGAAGGTCTCCGAGATCGAGTCTGTGGCACGCGCCGTG CTCCCGAAATTCTACACCTCCGACCTCCACCCGGAGTCCTGGCGGGTGTTCTCCACCTGCGGGCGGCGTGTCGTGCTCACCGCTAATCCTCGGATCATGG TGGAGCCTACTCTCAAGGAATTTCTTGGTGTGGACTTGGTTCTCGGCACGGAGATTTCTACGTATAAGGGACGCGCCACCGGGTTCGTGAAAGGAGCCGA AGGGGTGTTGGTTGGGGAGAGTAAAGCCCACGCGCTTGTGGAGGCGTTTGGAGAGTTCCAGCCGGAGGTTGGACTCGGCGACCGGCACACCGATGAGCCG TTTATGGCTCTTTGCAAGGAAGGCTACATGGTCCCACCGAACCCGAAAACCCGACCCGTCACCGCCGACAAGCTCCCTAAACCGATCGTCTTCCACGATG GCCGCCTCGTCCAGAAACCCACCCCACTCATCGCCCTCCTCACAATCCTCTGGATCCCCATCGGATTCCTCCTCGCCTGCCTCCGAATGGCCGCCGGCGC CCTCCTCCCGATGCCCTTAGTCTACTACGCCTTCACCGCCCTCGGTGTCCGCGTCACGATCCGCGGCCACCCACCGCCGCCACATCCCACCGACAAAAAC TCCTCCGGCGTCCTCTTTGTCTGCTCCCACCGCACCCTCCTCGACCCGATCTTCCTCTCCACCGCCCTGGGACGCCCCACCACCGCCGTCGTCTACTCTG TATCCCGCCTCTCCGAGCTCATCTCCCCGATCAAGACCGTCCGCCTCAACCGCGACCGTGCCGCCGACGCTTCTATGATCAAATCGCTCCTCCGCGAGGG AGATCTGGTGATCTGCCCTGAAGGGACCACTTGCCGCGAACCCTTCCTGCTCCGATTCTCGGCGCTGTTCGCAGAATTGACCGACGAGATCGTCCCCGTG GCGATGGTGAATCGGATGGGGATGTTCCACGGCACGACGGCGAGGGGGTGGAAAGGGATGGATCCGTTCTATTTTTTTATGAACCCTAGTCCGGCATATG AAGTGACGTTTTTAAGTAAGTTGCCAGAGGAGCTGACGTGTTCACGGGGAGGGAAGTCGAGTGTTGAAGTGGCGAACTATATACAGAGAGTGATTGCCGC TACGCTGTCGTATGAGTGTACTGGGTTTACCAGGAAGGATAAGTACAGAGCGTTGGCCGGAAACGACGGGATCGTCGTGACGGAGAAGAAGAAGTCGTCG TCGCCGTCGAAGGTTGATGAGATTAAAGAGAAAGTGACGGGATGCTAA
AA sequence Show only first row Show all	>Lus10036684 pacid=23171303 polypeptide=Lus10036684 locus=Lus10036684.g ID=Lus10036684.BGIv1.0 annot-version=v1.0 MATAARFSTVEKCDSTDRESHTVVADMDGTLLIGRSSFPYFALVAFEAGGILRLLLLLLLSPLAGLLYYFVSEKAGIQVLIFATFAGMKVSEIESVARAV LPKFYTSDLHPESWRVFSTCGRRVVLTANPRIMVEPTLKEFLGVDLVLGTEISTYKGRATGFVKGAEGVLVGESKAHALVEAFGEFQPEVGLGDRHTDEP FMALCKEGYMVPPNPKTRPVTADKLPKPIVFHDGRLVQKPTPLIALLTILWIPIGFLLACLRMAAGALLPMPLVYYAFTALGVRVTIRGHPPPPHPTDKN SSGVLFVCSHRTLLDPIFLSTALGRPTTAVVYSVSRLSELISPIKTVRLNRDRAADASMIKSLLREGDLVICPEGTTCREPFLLRFSALFAELTDEIVPV AMVNRMGMFHGTTARGWKGMDPFYFFMNPSPAYEVTFLSKLPEELTCSRGGKSSVEVANYIQRVIAATLSYECTGFTRKDKYRALAGNDGIVVTEKKKSS SPSKVDEIKEKVTGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10036684 [exp]	0	1
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	1.0	0.9278
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	4.7	0.8267
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	10.5	0.8046
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	13.0	0.6872
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	14.9	0.7364
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10043305 [exp]	15.7	0.8022
AT3G07870			F-box and associated interacti...		Lus10036105 [exp]	18.2	0.7638
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	18.8	0.7912
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	21.2	0.7763
AT2G23440			unknown protein		Lus10009345 [exp]	22.9	0.7190

Compare expression of checked genes

Lus10036684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.