Plant FIBer expression Database

Lus10036685 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27120 57 / 5e-10 Galactosyltransferase family protein (.1)
AT5G62620 54 / 7e-09 Galactosyltransferase family protein (.1.2)
AT1G74800 43 / 6e-05 Galactosyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037238
[exp]
278 / 8e-91 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G040400
[exp]
69 / 8e-14 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2)
Potri.015G067600
[exp]
47 / 1e-06 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10036685 pacid=23171323 polypeptide=Lus10036685 locus=Lus10036685.g ID=Lus10036685.BGIv1.0 annot-version=v1.0
ATGAAGAGAGTCAAGTTCGATTCGACGATACTGCCGCTCAATCGGATTCGGCTGATCCAAACTCTCATGGTGGGTCTTCTCCTCTACCTATTCTTCGTCA
GCATCGAGATCCCTCTGTTTTTCCGAACTGGGTCGGTGGACGTTTACGGGTCGGGAGACGGGTCTCTCGGCGACGGTTTGCCCAGTAGGCCGTGGATCTT
CGAGCGCGACGAAAGGCAGTTGTTCGAGCGGCAAGAAGAAGTGGAACCCAAGTCACAAATCGGCGGCGGAGGTCTCAATCCCATGGGTGGAGAATATTCG
GGTGCGGGTTACCGGAGCCCCGAGCGGAAAATGCGTGAGACGAACAAGAGAGCTTCGCAGTTGTTGTTCGATGTAATCTCTTCGCTCGACGATTTCTCGG
TGCTGTACAAGACGGCGAAACAGGCGTTGGTATCGGGGAAGAAAGTGTGGGAGGAATTGGAGTCGGGGAAAATTCAACCCGACCCGATCAGAACCGCCGA
CTTCACCAAAAAGAAGAACGAATCGACATAA
AA sequence
>Lus10036685 pacid=23171323 polypeptide=Lus10036685 locus=Lus10036685.g ID=Lus10036685.BGIv1.0 annot-version=v1.0
MKRVKFDSTILPLNRIRLIQTLMVGLLLYLFFVSIEIPLFFRTGSVDVYGSGDGSLGDGLPSRPWIFERDERQLFERQEEVEPKSQIGGGGLNPMGGEYS
GAGYRSPERKMRETNKRASQLLFDVISSLDDFSVLYKTAKQALVSGKKVWEELESGKIQPDPIRTADFTKKKNEST

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G62620 Galactosyltransferase family p... Lus10036685
[exp]
0 1
Lus10034709
[exp]
2.8 0.8787
AT5G11430 SPOC domain / Transcription el... Lus10008108
[exp]
3.5 0.8786
AT5G11430 SPOC domain / Transcription el... Lus10013146
[exp]
4.0 0.8777
AT5G55540 LOP1, TRN1 LOPPED 1, tornado 1 (.1) Lus10016591
[exp]
7.3 0.8644
AT1G23880 NHL domain-containing protein ... Lus10039421
[exp]
8.5 0.8556
AT4G03550 ATGSL5, PMR4, G... POWDERY MILDEW RESISTANT 4, gl... Lus10031648
[exp]
9.8 0.8845
AT3G61780 EMB1703 embryo defective 1703 (.1) Lus10004004
[exp]
13.0 0.8447
AT5G19620 TOC75-V, EMB213... translocon at the outer envelo... Lus10031272
[exp]
13.7 0.8550
AT3G46920 Protein kinase superfamily pro... Lus10040006
[exp]
16.2 0.8560
AT5G11700 unknown protein Lus10007461
[exp]
17.1 0.8590

Lus10036685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.