Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74800 711 / 0 Galactosyltransferase family protein (.1) AT5G62620 709 / 0 Galactosyltransferase family protein (.1.2) AT1G27120 684 / 0 Galactosyltransferase family protein (.1) AT4G21060 609 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 277 / 1e-86 GALT1 galactosyltransferase1 (.1) AT3G06440 268 / 3e-83 Galactosyltransferase family protein (.1.2) AT1G53290 67 / 5e-12 Galactosyltransferase family protein (.1) AT3G14960 65 / 2e-11 Galactosyltransferase family protein (.1) AT2G26100 57 / 7e-09 Galactosyltransferase family protein (.1) AT1G11730 46 / 3e-05 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037238 [exp] 899 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 727 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 722 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 633 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 301 / 7e-96 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 300 / 7e-96 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 282 / 2e-89 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 283 / 4e-89 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 275 / 2e-85 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040400 [exp] 780 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 731 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 714 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 640 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 640 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 298 / 1e-94 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 293 / 8e-93 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.008G086900 [exp] 284 / 2e-89 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.001G392700 [exp] 69 / 1e-12 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 66 / 1e-11 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10036686 pacid=23171051 polypeptide=Lus10036686 locus=Lus10036686.g ID=Lus10036686.BGIv1.0 annot-version=v1.0 ATGATTGAGCTTTTAGGATTGAAGACTGTTGATGGTGAAGACCCGCCGAGGATCCTGCATTTCAACCCGAGGTTGAAAGGTGATTGGAGTGGTAAGCCGG TGATTGAGCAGAACACTTGCTACAGAATGCAGTGGGGGAATGCCTTGCGGTGTGAAGGCTGGAACTCCAGAGCTGATGAGGAGACTGTTGATGGGCAGAT GAAATGTGAGAAATGGGTGCGGGACGATGATGGGAACACCGATGATTCAAAGGCGGTTTGGTGGTTGAACAGGTTGATAGGGAGGACGAAGAAGATCGCG TATAATTGGCCTTTCCCTTTCGCAGAAGGAAAGTTGTTTGTTCTAACATTGACTGCTGGATTAGAAGGTTACCACATTAATGTCGATGGGAGGCATATCA CTTCGTTTCCATACCGGACTGGCTTTGTTCTTGAAGATGCTACTGGATTGAATTTGAACGGTGATGTGGACGTGGAAGCTGTATATGCTGCTTCGTTGCC TAGTTCGCATCCTAGCTTTGCTCCGCAGCAACATCTCGAGATGTTTAAGAAATGGCAAGCACCTGCTCTTCCCGTCGGCCAAGTGGAGCTTTTTATCGGC ATCCTATCCGCTGGGAATCATTTCGCAGAGCGGATGGCTGTGAGGAAAACGTGGATGCAGCATCACATGATTAAATCTTCGAGTGTCATTGCCCGATTCT TCGTTGCCCTGACCGGGAGAAAAGAAATCAACTTGATGCTGAAGAAAGAAGCGGAGTATTTCGGTGATATTGTTATAGTTCCTTACATGGATAACTACGA CCTTGTCGTGCTAAAGACAGTTGCAATATGCGAATATGGGGTTCGCAATGTTGCTGCGAAATACATTATGAAGTGTGACGATGATACATTTGTGAGAGTG GACGCTGTGATGAAGGAAGCGAAGAAAGTGGATGTAGAAAGAAGCTTATATGTCGGAAACATCAACTACTATCACAAGCCCTTGCGTGATGGCAAATGGG CAGTGACATACGAGGAATGGCCAGAGGAAGAGTACCCTCCCTATGCAAATGGTCCAGGCTACATCGTGTCATCTGACATCGCAGAGTTTGTAGTTTCCGA ATTTGAAGATCACAAACTCAGACTGTTTAAGATGGAAGATGTGAGCATGGGAATGTGGGTGGAGAAATTTAACACCTCGAAACCCGTTGAATATGTGCAC AGCTTGAAGTTCTGCCAATTCGGTTGCGTAGACGATTACTACACCTCCCATTACCAGTCTCCAAGACAGATGATATGCCTTTGGGATAAATTACATCAGG GAAAACCCCAATGCTGCAACTGGAGATGA
AA sequence Show only first row Show all	>Lus10036686 pacid=23171051 polypeptide=Lus10036686 locus=Lus10036686.g ID=Lus10036686.BGIv1.0 annot-version=v1.0 MIELLGLKTVDGEDPPRILHFNPRLKGDWSGKPVIEQNTCYRMQWGNALRCEGWNSRADEETVDGQMKCEKWVRDDDGNTDDSKAVWWLNRLIGRTKKIA YNWPFPFAEGKLFVLTLTAGLEGYHINVDGRHITSFPYRTGFVLEDATGLNLNGDVDVEAVYAASLPSSHPSFAPQQHLEMFKKWQAPALPVGQVELFIG ILSAGNHFAERMAVRKTWMQHHMIKSSSVIARFFVALTGRKEINLMLKKEAEYFGDIVIVPYMDNYDLVVLKTVAICEYGVRNVAAKYIMKCDDDTFVRV DAVMKEAKKVDVERSLYVGNINYYHKPLRDGKWAVTYEEWPEEEYPPYANGPGYIVSSDIAEFVVSEFEDHKLRLFKMEDVSMGMWVEKFNTSKPVEYVH SLKFCQFGCVDDYYTSHYQSPRQMICLWDKLHQGKPQCCNWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	0	1
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	1.0	0.8217
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	4.5	0.8115
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	4.9	0.7984
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	6.0	0.7781
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	6.6	0.7839
AT2G30990			Protein of unknown function (D...		Lus10020709 [exp]	7.3	0.7276
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	9.2	0.7553
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	13.3	0.7575
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	13.5	0.7380
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	14.0	0.7802

Compare expression of checked genes

Lus10036686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.