Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 314 / 2e-107 Putative membrane lipoprotein (.1) AT5G50290 103 / 1e-25 unknown protein AT3G17350 100 / 9e-25 unknown protein AT1G11915 84 / 2e-18 unknown protein AT5G02070 60 / 7e-10 Protein kinase family protein (.1) AT1G21270 51 / 4e-07 WAK2 wall-associated kinase 2 (.1) AT1G21230 50 / 8e-07 WAK5 wall associated kinase 5 (.1) AT1G21240 49 / 2e-06 WAK3 wall associated kinase 3 (.1) AT4G03230 44 / 9e-05 S-locus lectin protein kinase family protein (.1) AT3G53840 42 / 0.0004 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037235 [exp] 519 / 0 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10036702 [exp] 207 / 1e-67 AT1G10380 110 / 4e-30 Putative membrane lipoprotein (.1) Lus10037237 [exp] 201 / 7e-66 AT1G10380 125 / 3e-36 Putative membrane lipoprotein (.1) Lus10037078 [exp] 182 / 5e-55 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036906 [exp] 153 / 2e-45 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10042105 [exp] 106 / 8e-27 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 105 / 3e-26 AT5G50290 368 / 2e-128 unknown protein Lus10043098 [exp] 99 / 1e-23 AT3G17350 334 / 7e-115 unknown protein Lus10020667 [exp] 68 / 3e-13 AT5G02070 150 / 5e-42 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040500 [exp] 376 / 4e-132 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 191 / 2e-59 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 187 / 5e-58 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 186 / 1e-57 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.008G099800 [exp] 107 / 3e-27 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 102 / 3e-25 AT3G17350 339 / 4e-117 unknown protein Potri.015G078700 [exp] 96 / 4e-23 AT5G50290 387 / 4e-136 unknown protein Potri.011G007900 [exp] 87 / 1e-19 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 84 / 2e-18 AT1G11915 360 / 1e-124 unknown protein Potri.008G059900 [exp] 64 / 3e-11 AT5G02070 628 / 0.0 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036687 pacid=23171160 polypeptide=Lus10036687 locus=Lus10036687.g ID=Lus10036687.BGIv1.0 annot-version=v1.0 ATGGCTATCACTCTCTTTGCATTTCTAGTAGTAGCTCTCACAACATCATTCCCTCTCATGGTCTCATCACAAGCCTGCCAAAACTACTGCGGAACCGTCC CAATCAAGTACCCTTTCGGTACCGGACCAGGTTGTGGCGACCCCCGCTTCCAAAAGTACGTTACTTGCACCGAAAGCAAGCTCCTTTTCACCTCCCACAC CGGCTCCTACCCAGTCACAAACATAGACTACACCTCCCAAGTCATCTACATCTCCGACCCTTCCATGTCCACCTGCTCTTGTACTCAGCCCAGCAAAGGG TTCGGTCTAGATTGGGACGCCCCTTTCTCGTTCAACGAAAATACCGTCTTTACCCTCCTCGACTGTGGTACAAACAACGGCACTCATTGTGACATCACCG GCTCGCCAATCTGCAGCTTCCTGTATTCCTGCAGGGCCATCAGTACGGTGAACCTACCGATCTCTACCTGCTGTGTCTACACACCAGTCGATCTCGGCCC TTCATTTACGATGGACTTGGAGAAGCTGAAGTGTTCGTCGTACGCTGGATTCTACAGCTTCAACGGGCAGGAGTCAAACCCGGATGAGTGGAAGTATGGG ATTGCATTGAAGTATAAGTTCAATGTGTTTGATGATTACCCTGGTGCTTGTGCTAACTGTGAAAGAAGCCATGGCGTTTGTGGATACAGTACTGGAGAGT TTGATTCATTTGTCTGTAACTGTCCTAGTGGATTCAATACCACTTCTGATTGTATCTTCTTTAGCCATGCTGCTTCAAGCCATCTCCCTTGCACCATTGG TAACTTTCTTCTTCTTATTATTCTTCTGCTTGTCGTAATGTAA
AA sequence Show only first row Show all	>Lus10036687 pacid=23171160 polypeptide=Lus10036687 locus=Lus10036687.g ID=Lus10036687.BGIv1.0 annot-version=v1.0 MAITLFAFLVVALTTSFPLMVSSQACQNYCGTVPIKYPFGTGPGCGDPRFQKYVTCTESKLLFTSHTGSYPVTNIDYTSQVIYISDPSMSTCSCTQPSKG FGLDWDAPFSFNENTVFTLLDCGTNNGTHCDITGSPICSFLYSCRAISTVNLPISTCCVYTPVDLGPSFTMDLEKLKCSSYAGFYSFNGQESNPDEWKYG IALKYKFNVFDDYPGACANCERSHGVCGYSTGEFDSFVCNCPSGFNTTSDCIFFSHAASSHLPCTIGNFLLLIILLLVVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	1.4	0.9605
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	2.0	0.9583
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	2.0	0.9475
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	2.4	0.9544
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10012996 [exp]	3.7	0.9262
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	3.7	0.9326
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	6.7	0.9414
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	6.9	0.9372
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	8.1	0.9151
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	9.2	0.9249

Compare expression of checked genes

Lus10036687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.