Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10370 273 / 2e-93 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT1G10360 258 / 1e-87 GST29, ATGSTU18 GLUTATHIONE S-TRANSFERASE 29, glutathione S-transferase TAU 18 (.1) AT1G27130 238 / 2e-79 GST12, ATGSTU13 GLUTATHIONE S-TRANSFERASE 12, glutathione S-transferase tau 13 (.1) AT1G59700 235 / 3e-78 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT1G69930 234 / 7e-78 ATGSTU11 glutathione S-transferase TAU 11 (.1) AT1G27140 228 / 3e-75 GST13, ATGSTU14 GLUTATHIONE S-TRANSFERASE 13, glutathione S-transferase tau 14 (.1) AT1G69920 216 / 2e-70 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT1G59670 213 / 1e-69 ATGSTU15 glutathione S-transferase TAU 15 (.1) AT3G09270 164 / 2e-50 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29480 162 / 6e-50 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037234 [exp] 415 / 3e-149 AT1G10370 285 / 2e-98 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10030805 [exp] 327 / 1e-114 AT1G10370 308 / 4e-107 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10030806 [exp] 306 / 4e-106 AT1G10370 290 / 4e-100 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10013282 [exp] 246 / 8e-83 AT1G10370 229 / 2e-76 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10009746 [exp] 176 / 8e-57 AT1G10370 96 / 1e-25 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Lus10029518 [exp] 176 / 1e-56 AT1G69930 96 / 3e-25 glutathione S-transferase TAU 11 (.1) Lus10016471 [exp] 169 / 2e-52 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 167 / 1e-51 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 165 / 6e-51 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G032800 [exp] 303 / 4e-105 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.010G035500 [exp] 300 / 5e-104 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.008G175100 [exp] 176 / 3e-55 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G060900 [exp] 169 / 2e-52 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 168 / 4e-52 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 163 / 4e-50 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.016G023200 [exp] 158 / 2e-48 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.002G254000 [exp] 158 / 4e-48 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G023340 [exp] 157 / 1e-47 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 155 / 3e-47 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036688 pacid=23171184 polypeptide=Lus10036688 locus=Lus10036688.g ID=Lus10036688.BGIv1.0 annot-version=v1.0 ATGGCCAACAGCGGCAACGGCGATGTGAAGGTGATCGGCGCGTGGCCGAGTCCGTACGTGATGAGGCCCAGAATCGCCCTGAACATGAAATCAGTGGAGT ACGAGTTCTTGCAGGAACAATTCGGTACCAAGAGCGAGCTCCTCCTGAAATCGAACCCGGTTCATAAGAAAATCCCGGTTCTTCTCCACAACGACAAAGC CATCTGCGAGTCCAACATTATCGTCGAGTACATCGACGAGGTTTGGTCATCTGGCCCTTCCCTGCTGCCTTCCGACGCCTATGACCGCTCCATTGCGCGC TTCTGGGCCTCCTACCTCGACGAGAAGTGGTTCCCCAGCCTAAGATCAGCAGCAACAGCTCCCGACGAGGAAGCCAAGGCAGCAGCAAAGGATCAGCTCA AGGAAGGGCTAGCCCTACTGGAAGAAGCCTACGAGAAGATCAGCAAAGGCAAAGACTTTTTCGGAGGGGAAACGATCGGGTTCTTGGACATTGCGTTTGG GAGCTTGTTGGGTTGGGTCGGAGCAGTTTCAGCGATGATCGGGACCAAGGTGATCAACGAGGAGTCCACTCCTGGTCTGGCTAAATGGATCGAGAAATTC TCAGCTCATGCTGCTGTGAAAGATGTGATGCCTGAGACTGAGAAGCTCGTTGAGTTTGCAAAGTTTATGGCTGCCAAGAGGAAAGAGTAA
AA sequence Show only first row Show all	>Lus10036688 pacid=23171184 polypeptide=Lus10036688 locus=Lus10036688.g ID=Lus10036688.BGIv1.0 annot-version=v1.0 MANSGNGDVKVIGAWPSPYVMRPRIALNMKSVEYEFLQEQFGTKSELLLKSNPVHKKIPVLLHNDKAICESNIIVEYIDEVWSSGPSLLPSDAYDRSIAR FWASYLDEKWFPSLRSAATAPDEEAKAAAKDQLKEGLALLEEAYEKISKGKDFFGGETIGFLDIAFGSLLGWVGAVSAMIGTKVINEESTPGLAKWIEKF SAHAAVKDVMPETEKLVEFAKFMAAKRKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10036688 [exp]	0	1
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	15.2	0.8351
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	43.6	0.7850
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	80.7	0.7685
AT5G12900			unknown protein		Lus10031820 [exp]	86.9	0.7335
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	97.8	0.7618
AT5G25360			unknown protein		Lus10030101 [exp]	99.9	0.7532
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	116.2	0.7497
AT5G10110			unknown protein		Lus10022498 [exp]	166.4	0.7377
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	166.4	0.7349
AT1G08220			unknown protein		Lus10021398 [exp]	191.7	0.7446

Compare expression of checked genes

Lus10036688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.