Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58003 446 / 3e-154 CPL4 C-terminal domain phosphatase-like 4 (.1) AT2G33540 219 / 5e-62 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1) AT2G04930 168 / 2e-48 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 164 / 2e-46 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 155 / 3e-43 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 149 / 5e-41 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 144 / 6e-39 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 139 / 4e-37 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 124 / 2e-32 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 123 / 2e-32 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036277 [exp] 758 / 0 AT5G58003 474 / 4e-165 C-terminal domain phosphatase-like 4 (.1) Lus10037233 [exp] 745 / 0 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10021854 [exp] 253 / 1e-81 AT5G58003 184 / 5e-56 C-terminal domain phosphatase-like 4 (.1) Lus10036271 [exp] 224 / 1e-63 AT2G33540 874 / 0.0 C-terminal domain phosphatase-like 3 (.1) Lus10015787 [exp] 47 / 2e-05 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108300 [exp] 537 / 0 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1) Potri.003G164300 [exp] 218 / 1e-61 AT2G33540 905 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.001G065600 [exp] 217 / 4e-61 AT2G33540 919 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.003G173700 [exp] 52 / 4e-07 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 47 / 2e-05 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 45 / 8e-05 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 43 / 0.0004 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10036689 pacid=23171332 polypeptide=Lus10036689 locus=Lus10036689.g ID=Lus10036689.BGIv1.0 annot-version=v1.0 ATGAGTCTTGTCATTGATTCTCCAGTGAATTCCTCTAGTAGTGATGATTTTGCTGCTTTCCTCGATGGACATCTTGACTCCAAATCTTCGGATGATGATG GAGAAGTGAAAAATGGTTCTGCTTGTAGCTTTTCTGCCTCCTCATCCAGTGAGGAAGAATCTGAAGATGAAGAGGATAATCAACCTATAAGCAAGAGGAT CAAGATTTCTGAGTTGGAGATACTAGAAAATGGAGATAGCCGCAAGGGCTCAACTTCCCAGGCAATAGTAGAGCAGAAATTAGGTACTTTCATGATGAAG TTAATTAACATGTGGTTCTGCTCTTTGGCCTGGTATTCTGCAGAAGCATCATCAAGTTCAACTATCAGCAAGAACGAGTGTGCACATCGAGGATCTTTTG CTAATATGTGTATAGATTGTGGGCAGTTTCTTGGTGAGGAATCTGGCTTAGCACTTTCATATATACACAAGCAAATCAGACTTGGGAATGACGAAATAAA AAGATGTCGGGATATCGAGACGAAGAGCTTGTTGCGCCAAAAGAAGCTATACCTCATACTTGATCTGGATCATACCTTGCTGAACTCTACTCTTCTTGGG CATATGGTGCCAGAAGAGGAGTATCTGAATGATCGACTGGATTCCATTCAAGATGCTCGAAATAGAAGCTTATTCAAGTTGAACTCCATGCATATGATGA CCAAGCTGAGACCCTATGTGCGTTCATTTCTGAAGGATGCTAGTCAATTGTTTGATATGTATATATATACCATGGGCGACAAAGCTTATGCACTGGAAAT GGCCAATTTGCTTGATCCGGGAAAAGAATACTTTGATGCGAAGGTTATTTCTCGTGATGATGGAACTCAGAGACATCAGAAGGGTCTTGATGTGGTGCTA GGAGAAGAGAGTGCGGTTCTCATCCTTGACGATACTGAAAATGTATGGCCGAGTCATAGGGACAACTTGATACTGATGGAAAGATACCATTTCTTTGCTT CAAGCTGTCGTCAATTTGGATTCGAATGCAAATCTCTCTCACAACATAAAATCGATGAGAGTGAACCCGAAGGAGCACTTGCAACAGTTCTGAAGGTCCT GCAAAGAGTTCACTATATCTTCTTCCTCGAACTCGAAGACCAAGCTGGTTGCAGAGACGTGAGGCAGGTTCTGAAAACTGTCCGTAGCGACGTGCTGAAG GGGTGCAGGATCGTGTTCAGCAGGGTTTTCCCAACCCATTTCCCAGCAGAGAGTCACCACCTGTGGAAGATGGCCGTAAATCTCGGAGCAACATGTACAA TAGAAGTCGATCCATTGGTGACCCATGTTGTTGCCATGGATCACGGTACGAAGAAATCTCGTTGGGCACTAGAGAACCACAAGTTCTTAGTCCTCCCACG GTGGATAGAGGCAGCAAACTATCAGTGGCAGAGGGTGCCGGAGGAGAATTTCTCAGTGAACCAAACCCCTAAGTAG
AA sequence Show only first row Show all	>Lus10036689 pacid=23171332 polypeptide=Lus10036689 locus=Lus10036689.g ID=Lus10036689.BGIv1.0 annot-version=v1.0 MSLVIDSPVNSSSSDDFAAFLDGHLDSKSSDDDGEVKNGSACSFSASSSSEEESEDEEDNQPISKRIKISELEILENGDSRKGSTSQAIVEQKLGTFMMK LINMWFCSLAWYSAEASSSSTISKNECAHRGSFANMCIDCGQFLGEESGLALSYIHKQIRLGNDEIKRCRDIETKSLLRQKKLYLILDLDHTLLNSTLLG HMVPEEEYLNDRLDSIQDARNRSLFKLNSMHMMTKLRPYVRSFLKDASQLFDMYIYTMGDKAYALEMANLLDPGKEYFDAKVISRDDGTQRHQKGLDVVL GEESAVLILDDTENVWPSHRDNLILMERYHFFASSCRQFGFECKSLSQHKIDESEPEGALATVLKVLQRVHYIFFLELEDQAGCRDVRQVLKTVRSDVLK GCRIVFSRVFPTHFPAESHHLWKMAVNLGATCTIEVDPLVTHVVAMDHGTKKSRWALENHKFLVLPRWIEAANYQWQRVPEENFSVNQTPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	0	1
AT1G76480			unknown protein		Lus10006035 [exp]	4.4	0.9071
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	5.5	0.8987
AT2G17787			unknown protein		Lus10017274 [exp]	7.5	0.8922
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	8.9	0.8894
AT5G65540			unknown protein		Lus10025712 [exp]	11.2	0.8869
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10041998 [exp]	11.7	0.8894
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	12.3	0.9023
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	16.4	0.8853
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	16.9	0.8557
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	17.7	0.8767

Compare expression of checked genes

Lus10036689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.