Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27150 409 / 1e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27110 378 / 1e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037232 [exp] 614 / 0 AT1G27150 592 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036324 [exp] 157 / 1e-45 AT1G27150 276 / 6e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035400 [exp] 427 / 8e-148 AT1G27150 586 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036690 pacid=23171023 polypeptide=Lus10036690 locus=Lus10036690.g ID=Lus10036690.BGIv1.0 annot-version=v1.0 ATGGAGAAGGAACACGGCGGCGACGGCGACAGCGTGAAGCTGAACCGGTGGGGCTATGAAGCCAACACTTCGTCCGATGACTGCGTCTCCCTCGTCAACT CTTACTGCAACCAGGTTTTGAGTTACGGGAGAAGGAGGCGGGTGATTCTGGAAGCAGCTGAACTGGATAAAGGTTGCGTCTTGGCCAACATTTTGGCTGC TCATTACGTCGGCTCTACTCATTCCACTTCACACTTCCAAGCTGCCAAGTCTGAAGTCGATAAGGCATCACCGTATGAGAAGGCCGTTTATGAAGCCATC AGTTATCTGATTTCTGAAGATAGGGACGATGACGTGGCTTTTGAACTCCACTCCAAACTTCTGGATGACTATCCAAAGGACCTGTGTTCTCTGAAGAGAG CTCAAGTGCTATGCTTCTATATGGGCAGACCAGACCTCTCTTTGCAACTTATCCAAAAGGTTCTGCCACATGTTGAGGGAGAAGAGTATGTGTATGGTAT GCTTGCATTTCCATTGTTGGAGCTTGGTCGGATCGCTGAAGCTGAGGATGCTGCAAGAAAGGGATACGAGATCAACCGAAACGATTACTGGGCACAGCAT GCTCTGTGCCATGTTTTCCAGTATCAATGTCGTTTTAGGGAAGCTGTTCGGTTCATGGAAGAATGCTCCCCTTCATGGACTTGTTGTTCGTCGTTCATGC TGACGCATAACTGGTGGCATGTTGCTCTTTGTTACCTAGAAGGTAATTGCACGATAGCGAAAGTTGTGGAAATCTACGATCTTCGAATCTGGAAGGAGTT GGAGCGAGATGATGCCACTGCTCCAGAGGTGTACCTGAATGCTATAGGATTGTTGCTGCGATTGTCTGTTCGAGGAATGCTTGATGTCTTTCGACATCAA TTCAAGGTCTTGGCCGATCGGGTAGCAGACAGAATAATCGGGGCATCTGACGAGCAACTCGATGTGTTCAACGAAGTCTGGTTCAACATGCTGCTCAATA CTGGAGAAGCAACTAAAGCAATCGAAGCGATCGAGAAGCAGATCAATAAGCGCGATGGAACCCCTTTCACATGGCGCCTATTGGAGAGAGCATATCGGAC AATGGGTAGCGAAGAGGTGGCATCGGCAGCCGCCAAGAAGGCAAGAACTCTAGAAACTGCATACTTCACATAG
AA sequence Show only first row Show all	>Lus10036690 pacid=23171023 polypeptide=Lus10036690 locus=Lus10036690.g ID=Lus10036690.BGIv1.0 annot-version=v1.0 MEKEHGGDGDSVKLNRWGYEANTSSDDCVSLVNSYCNQVLSYGRRRRVILEAAELDKGCVLANILAAHYVGSTHSTSHFQAAKSEVDKASPYEKAVYEAI SYLISEDRDDDVAFELHSKLLDDYPKDLCSLKRAQVLCFYMGRPDLSLQLIQKVLPHVEGEEYVYGMLAFPLLELGRIAEAEDAARKGYEINRNDYWAQH ALCHVFQYQCRFREAVRFMEECSPSWTCCSSFMLTHNWWHVALCYLEGNCTIAKVVEIYDLRIWKELERDDATAPEVYLNAIGLLLRLSVRGMLDVFRHQ FKVLADRVADRIIGASDEQLDVFNEVWFNMLLNTGEATKAIEAIEKQINKRDGTPFTWRLLERAYRTMGSEEVASAAAKKARTLETAYFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	4.5	0.8802
					Lus10031452 [exp]	4.6	0.8667
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	5.3	0.8614
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	5.8	0.8746
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	7.7	0.8623
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	8.5	0.8614
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	9.8	0.8645
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	10.4	0.8396
					Lus10018814 [exp]	12.0	0.8222
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	12.4	0.8507

Compare expression of checked genes

Lus10036690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.