Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69910 578 / 0 Protein kinase superfamily protein (.1) AT1G18390 280 / 3e-85 Protein kinase superfamily protein (.1.2) AT1G25390 265 / 7e-80 Protein kinase superfamily protein (.1) AT2G23450 261 / 1e-77 Protein kinase superfamily protein (.1.2) AT1G66880 256 / 2e-73 Protein kinase superfamily protein (.1) AT5G66790 246 / 7e-73 Protein kinase superfamily protein (.1) AT5G38210 245 / 7e-72 Protein kinase family protein (.1) AT5G02070 227 / 2e-65 Protein kinase family protein (.1) AT4G00330 218 / 2e-64 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 218 / 1e-63 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022432 [exp] 264 / 6e-79 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 261 / 9e-78 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 256 / 2e-76 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 246 / 4e-72 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032741 [exp] 241 / 4e-70 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 239 / 5e-70 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040704 [exp] 226 / 5e-67 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10036376 [exp] 221 / 1e-65 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10041796 [exp] 219 / 2e-65 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035300 [exp] 664 / 0 AT1G69910 687 / 0.0 Protein kinase superfamily protein (.1) Potri.015G044750 [exp] 286 / 2e-87 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 283 / 2e-86 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 278 / 1e-84 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G118100 [exp] 278 / 6e-84 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 275 / 5e-83 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G096900 [exp] 268 / 2e-80 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.010G120800 [exp] 268 / 4e-80 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 266 / 6e-80 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.017G118250 [exp] 266 / 1e-79 AT5G38210 542 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036691 pacid=23171198 polypeptide=Lus10036691 locus=Lus10036691.g ID=Lus10036691.BGIv1.0 annot-version=v1.0 ATGCCTCCCTCTCCTCCGCCACTGTCACCCATCTTCCACAACCTCCTCATCCTCATCCTCTTTGCCGCCGTCTCCACAACCCACTCCTGCAACTCCCACC ACCACCCTCCACCTCACTGCCCACCTTTCACCACCACTTCCCCGCCGCCTTACTCTTTCTCCACCTCCCCCGGCTGCGGCCACCCTTCATTCCCTCTCAA ATGCTCCACCCCTCACTCAATCCTCTCCTTCCCAAACTCCACCGCCGCCTTCTCCCTCATCTCCTTCAACCCAAACTCCTCCACTCTCTCCATCTCCCCT CTCCTCCACTCTTCACCTAACTGCTCCTCACTCCCTCCGCCTCTCCATTTCCCGCCGCCGTTCACCCCATCCGACGGTTCCTGCTCCCGCCTCTCCGCCC TCCGGTCCTGCTCCTCCCCTCCGATCCTCCCCAATTGCTCCATCTGCCCTAACGATTGCTCCCTTGTCAAATCCCCTCTCCGTATCCTCCCTTCCTGCTC CTCTTCCCCTCGCCACCACCCTTCCTTACAAGGCTGCCAGTCCGACGTCCTTGACTATCTGGGGAAGTTCCTCCTTCTTGGTTTCGAGGTTGAATTCGAC AACAAGGACGAGTATTTCTCGAAATGTAGCATTTGTAAGTCCTCAAATGGCGTCTGCGGGTTCAATTCGTCAGATCTGGAGAAAGGATTCCTCTGTTTCA AGTCGACTGCGAGTTCTCGGATCTCGCCATGGATTGGAGAGAAAGATACGAATCGGATCGCGATTCTGTGTTCGGTTTTCACTGCTCTCTGTTTGGTTCT AGTGGTTTTGGTTTTGGTAGCAGTTTTCAGATCCAGGCAGCTGAAGTCGGTCGTGGCGGAGGAAGATCCGACGGCGACGTTCCTACGCCGGCACCGGTCT TCGAGCTTGCTCCCGCCGGTGTTCACCTACGAGGAGCTTGAAGCGTCGACGAACAGGTTTGATCCGAAGAGGAAGATCGGAGACGGCGGGTTCGGGTCTG TTTACTTGGGGCAGCTGTTCGACGGCAGGATCGCCGCCGTGAAGTTCCTCCACCGGCAGCACCACCGCGATGCCGCTGCAGCGATCTCGGCGAAGTCGTT CTGCAACGAGATCCTGATCCTCTCCTCGATCGACCATCCAAATTTGGTGAAGCTCCATGGATACTGCAGCGATCCGAGAGGGATGCTGCTGGTTCACGAC TACGTCCCCAATGGAACCCTAGCCGACCACCTCCACGGACCGCGGAGGTCGGGGATGACGTGGCGGGTCCGCCTCGAGATGGCCGTTCAAATGGCGTCGG CTCTCGAATATCTGCATTTCGACGTTAAGCCGGCGATCGTCCACCGAGACATAACGTCGAGCAACATCTTCGTCGAGCGGGACATGAGGATCAAAGTCGG GGATTTCGGGCTATCGAGGCTGCTGGTATTCTCCGAACCAGCGGCGAATAATCCGACGTCGTGTTCGTCCGGGTACGTGTGGACCGGACCACAAGGGACT CCGGGTTATTTAGACCCGGATTACCACAAGTCGTTCCGGTTGACCGAGAAGAGCGACTTGTACAGCTTCGGAGTGGTGTTGCTTGAGCTGATTACGGGTT TGAAACCGGTGGATCAGAACCGGGACAAGAGAGAAATGGCGTTGGCTGATTTGGCGGTTTCGAGGATCCAAATGGGTCAGCTTCATCAGGTGGTCGACCC GGTTTTGAAGAAGGAAGAAGGTGCTATGGAAGGAGTTGATGCGGTGGCGGAGCTTGCTTTCCAGTGCGTGGCGGCGGATAAAGATGATCGGCCGGACGCT AGAGGGGCAGTGGAGGAGTTGAAGCGGATCCGGAGCAGGACCCGGTGTGTTGTGTTTCGCGGGTCGGGTAAAATTGAGGAAGCTGAGAGGGGATGA
AA sequence Show only first row Show all	>Lus10036691 pacid=23171198 polypeptide=Lus10036691 locus=Lus10036691.g ID=Lus10036691.BGIv1.0 annot-version=v1.0 MPPSPPPLSPIFHNLLILILFAAVSTTHSCNSHHHPPPHCPPFTTTSPPPYSFSTSPGCGHPSFPLKCSTPHSILSFPNSTAAFSLISFNPNSSTLSISP LLHSSPNCSSLPPPLHFPPPFTPSDGSCSRLSALRSCSSPPILPNCSICPNDCSLVKSPLRILPSCSSSPRHHPSLQGCQSDVLDYLGKFLLLGFEVEFD NKDEYFSKCSICKSSNGVCGFNSSDLEKGFLCFKSTASSRISPWIGEKDTNRIAILCSVFTALCLVLVVLVLVAVFRSRQLKSVVAEEDPTATFLRRHRS SSLLPPVFTYEELEASTNRFDPKRKIGDGGFGSVYLGQLFDGRIAAVKFLHRQHHRDAAAAISAKSFCNEILILSSIDHPNLVKLHGYCSDPRGMLLVHD YVPNGTLADHLHGPRRSGMTWRVRLEMAVQMASALEYLHFDVKPAIVHRDITSSNIFVERDMRIKVGDFGLSRLLVFSEPAANNPTSCSSGYVWTGPQGT PGYLDPDYHKSFRLTEKSDLYSFGVVLLELITGLKPVDQNRDKREMALADLAVSRIQMGQLHQVVDPVLKKEEGAMEGVDAVAELAFQCVAADKDDRPDA RGAVEELKRIRSRTRCVVFRGSGKIEEAERG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	0	1
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	2.2	0.8980
AT5G65250			unknown protein		Lus10000635 [exp]	2.4	0.8730
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	2.4	0.8893
AT3G19330			Protein of unknown function (D...		Lus10031977 [exp]	6.0	0.8429
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	6.0	0.8673
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	8.1	0.8645
AT5G08060			unknown protein		Lus10034681 [exp]	8.8	0.8358
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	9.8	0.8514
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	10.0	0.8419
AT4G26670			Mitochondrial import inner mem...		Lus10032577 [exp]	11.1	0.8018

Compare expression of checked genes

Lus10036691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.