Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59710 311 / 2e-106 Protein of unknown function (DUF569) (.1) AT1G69890 297 / 4e-101 Protein of unknown function (DUF569) (.1) AT1G27100 301 / 2e-99 Actin cross-linking protein (.1) AT3G28630 285 / 8e-96 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT3G01311 254 / 6e-84 Protein of unknown function (DUF569) (.1) AT1G69900 177 / 7e-53 Actin cross-linking protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030804 [exp] 379 / 5e-133 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10001124 [exp] 284 / 1e-94 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10015346 [exp] 284 / 1e-94 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10013281 [exp] 258 / 3e-86 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10037230 [exp] 263 / 7e-86 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10036693 [exp] 177 / 4e-55 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 129 / 3e-35 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036692 [exp] 43 / 2e-05 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035100 [exp] 387 / 4e-133 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 375 / 3e-128 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1) Potri.017G075900 [exp] 298 / 9e-99 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1) Potri.004G130200 [exp] 290 / 2e-95 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF04601 [flax] [poplar] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Lus10036694 pacid=23171292 polypeptide=Lus10036694 locus=Lus10036694.g ID=Lus10036694.BGIv1.0 annot-version=v1.0 ATGGACTTCTTCCATAAGGCCTCAGCCGTTCGCCTCCGCAGCCACCACGACAAGTACCTCCACGCCGACGAAGACGAGGAATCCGTCGTCCAGGACCGGA ACGGGTCTGCCAAAAACGCCAAGTGGACCGTGGAGCCCGTACCTGGATCCGAATCGGTGATCCGACTCAAGTCCTGCTACTCCAAGTACTTAACGGCTTC CGATCACCCTTTCCTGTTGGGGATGACCGGCCAGAAGGTCCTCCAGACTTCCCCTCGCCGTCTCGACTCCTCCGTCGAGTGGGAGCCCGTCCGGGAAGGC GCCCAGATCAAGCTCCGAACCCGGTACGGCAACTTCCTCAGAGCTAACGGCGGGCTTCCGCCGTGGAGAAACTCCGTCACTCACGACATCCCTCACCGGA CCGCCACCCAGGACTGGATCCTCTGGGACATAGACGTTGTCGAGATTCAGGTCCTTTCTCCGGCGGCCAAGCCCTCCGCGCCGCCGCTTCCTCACTCGGA TTCTCTCGGTTCGGTTTCTTCCGATTCCGCCCCACCCGGCAATGTTTCGAAATTAGAGTCGAATGGTGGATCGCCACCGAAGATGGCGGAGGGGAGGACG ATATACTACCACGTGGCGGAGGAGGGATGGGAGGATGATGACGATGACGTGGCGGAAGGGTATTCGTTGAACTTCAAAGGGAATGGAGTTGAAGGGTTGA CTGAGAAGTTGAAAGAAGTGACTGGTTTTTCTGAAGAAGGTATAGTTGTGTGTTCTAAGAGTCCTTTGAATGGCAAGCTTTACCCTCTGAGATTGCAGCT CCCTCCTAACAACTCCGACATGCACGTCGTCGTTGTCCCTTCATCTTCCAAAGTGGCCAAAGAGTTATCAAAGCAAGGACTCTTGTGA
AA sequence Show only first row Show all	>Lus10036694 pacid=23171292 polypeptide=Lus10036694 locus=Lus10036694.g ID=Lus10036694.BGIv1.0 annot-version=v1.0 MDFFHKASAVRLRSHHDKYLHADEDEESVVQDRNGSAKNAKWTVEPVPGSESVIRLKSCYSKYLTASDHPFLLGMTGQKVLQTSPRRLDSSVEWEPVREG AQIKLRTRYGNFLRANGGLPPWRNSVTHDIPHRTATQDWILWDIDVVEIQVLSPAAKPSAPPLPHSDSLGSVSSDSAPPGNVSKLESNGGSPPKMAEGRT IYYHVAEEGWEDDDDDVAEGYSLNFKGNGVEGLTEKLKEVTGFSEEGIVVCSKSPLNGKLYPLRLQLPPNNSDMHVVVVPSSSKVAKELSKQGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59710			Protein of unknown function (D...		Lus10036694 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	1.7	0.9276
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	2.8	0.9126
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	4.2	0.9138
AT1G29290			unknown protein		Lus10007309 [exp]	4.7	0.9263
AT3G03280			unknown protein		Lus10013490 [exp]	12.0	0.9055
AT5G17350			unknown protein		Lus10034636 [exp]	12.4	0.8825
AT1G07160			Protein phosphatase 2C family ...		Lus10026381 [exp]	13.0	0.9052
AT3G16210			F-box family protein (.1)		Lus10023372 [exp]	13.8	0.8768
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	14.5	0.8817
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	16.0	0.8805

Compare expression of checked genes

Lus10036694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.