Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 191 / 1e-56 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 163 / 2e-46 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 143 / 3e-39 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 137 / 4e-37 Leucine-rich repeat protein kinase family protein (.1) AT3G49750 96 / 2e-23 AtRLP44 receptor like protein 44 (.1) AT2G01950 91 / 1e-20 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT3G02880 87 / 3e-19 Leucine-rich repeat protein kinase family protein (.1) AT4G39400 85 / 2e-18 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G71830 84 / 3e-18 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G25470 83 / 8e-18 AtRLP21 receptor like protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037226 [exp] 360 / 1e-126 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 300 / 1e-98 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 276 / 8e-89 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10036704 [exp] 183 / 5e-59 AT5G48380 124 / 4e-34 BAK1-interacting receptor-like kinase 1 (.1) Lus10034278 [exp] 188 / 2e-58 AT5G48380 189 / 5e-55 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 136 / 1e-36 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030812 [exp] 126 / 4e-35 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10011561 [exp] 97 / 8e-24 AT3G49750 394 / 7e-140 receptor like protein 44 (.1) Lus10019277 [exp] 94 / 1e-22 AT3G49750 399 / 8e-142 receptor like protein 44 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078900 [exp] 239 / 5e-75 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 233 / 7e-73 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 230 / 7e-72 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 230 / 1e-71 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 219 / 2e-67 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003550 [exp] 201 / 2e-65 AT5G48380 180 / 5e-54 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 208 / 5e-63 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G074400 [exp] 176 / 2e-51 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 170 / 6e-49 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 165 / 3e-47 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036697 pacid=23171225 polypeptide=Lus10036697 locus=Lus10036697.g ID=Lus10036697.BGIv1.0 annot-version=v1.0 ATGGTGTTTGCGAGTAGTGGGACATTGGGCCAGGATTTTTACTCCGACATTGATTGCCTGAGGGCCATAAAAGATTCTCTTGAAGACCCTTTCGGCTACC TCAGTGCTACATGGAACTTCAACAACAACACAGAAGGCTTCATATGCAAGTTCACCGGAGTCGATTGTTGGCACCCTGACGGGAACAAGGTGTTGAACAT TCGCCTCTCCGACATGGGTCTCAAAGGCCAGTTCCCCACTGGTATCAGGAACTGCACCAGCATCACAGGATTGGATCTTTCGAACAATAAGCTGTCGGGA CCAATTCCTGAAAACATAGGCAATATTGTGAGTTATTTGACATCTCTCGATCTGTCTTCCAACGAGTTTTCAGGGCCAATTCCAGCACATCTTGCCAACT TGAGCTACTTGAGTGCCCTGAATCTTGACCATAACCGACTCAGTGGTTCAATTCCTGAAGAGATGGCCAATCTCCATCGAATCAAGACCTTCAACGTTGC GAATAACCTTCTGTCTGGGCCTGTCCCAAGGTTCACGAATGCCACAATCCCTCCAGAAAACTATGCAAACAATCCCGGACTTTGTGGGCCGCCTTTGGAT CGCTGCGTTGGTGGTTCAGGTGGTGGATGGCGGACCGATTCAGGTAGTTTCGTAGCGGCACACATTGCCGGGGGAACTGTAGTAGCTGTGGGTTTCTGTG TTGTTGTTCTGCTCTATTTCCTCAGGAAAAGAGACCAAAGAAATGGAGCAACATATGCTTGA
AA sequence Show only first row Show all	>Lus10036697 pacid=23171225 polypeptide=Lus10036697 locus=Lus10036697.g ID=Lus10036697.BGIv1.0 annot-version=v1.0 MVFASSGTLGQDFYSDIDCLRAIKDSLEDPFGYLSATWNFNNNTEGFICKFTGVDCWHPDGNKVLNIRLSDMGLKGQFPTGIRNCTSITGLDLSNNKLSG PIPENIGNIVSYLTSLDLSSNEFSGPIPAHLANLSYLSALNLDHNRLSGSIPEEMANLHRIKTFNVANNLLSGPVPRFTNATIPPENYANNPGLCGPPLD RCVGGSGGGWRTDSGSFVAAHIAGGTVVAVGFCVVVLLYFLRKRDQRNGATYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	1.0	0.9707
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	2.0	0.9629
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	3.6	0.9162
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10039771 [exp]	3.9	0.9102
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	4.2	0.9524
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	5.1	0.8815
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	5.3	0.9126
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	6.0	0.9511
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020492 [exp]	6.0	0.9044
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	6.8	0.8941

Compare expression of checked genes

Lus10036697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.