Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27090 333 / 1e-112 glycine-rich protein (.1) AT3G24690 88 / 5e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037224 [exp] 510 / 0 AT1G27090 356 / 7e-120 glycine-rich protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034900 [exp] 362 / 8e-124 AT1G27090 371 / 5e-126 glycine-rich protein (.1) Potri.008G194200 [exp] 339 / 8e-115 AT1G27090 359 / 3e-121 glycine-rich protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036699 pacid=23171027 polypeptide=Lus10036699 locus=Lus10036699.g ID=Lus10036699.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTCCTGTTCCCGAATCCGCCGACGGCCCAGTCCTCAACCTAATCAACAAACGCCTCCGCGCCCTCCGGAAGAAGCAAAACAGAATCATTC AGATGGAAGAATCCCTCGCCCAAGGGAAGCCACTCAACAAGGAGCAAGAAGAGGTACTCCGCTCCAAGCCTTCCGTCACCGCCTCAATCGACGAACTCGA GAAGCTCCGCCAGCCCCTATCTGTCGCCGTCTCTGAGGAAATCGACCTCGCTATAAAGAACATCAAGGCTCCGGAACCGGCGGAGAAGAACGGCGATGTG GAGCAGGTGGAGAAGGAGAAGGAAGGGAGCGATCCTAAGTCTGATGATGCTATCGAGTCGATGGTCGGGGATCTACTCAACTTGCTCTACTTCGGAGCTC TGTTCGACGTGAAGTCGCAGAACGATTTCACAGCCACGATGTTGACCAGGACTCACGAGAGAGGATGCTGCTTGACTTACGATTACGTCACTGACGACGC TACCGATCTGCTGAGTGAAAAAGATTTGGACTTGATTTCTTCCCTCAGTGGATTGCTTGTTTCTCGTCCTCTGGATTCCAGTTTGTCGCATAAAAATGCT CTCCAGCGATGTGTTGAGCATGCGAAACTGTGGCTGGCTAATTCGGATAGCTCTTTGGATCACAATGCCAGCGTTTCCTATGCAGGATTGAGGGAAAGGC TTAACAAGATAATGGCTTCTGACTATTTTACCACGACGCCGGAGAGGAAAGCACCAGTGGAGGTTGGGAATTTTGGTTCTTTCCAAGTTCCGGTTCAGGT GGAAGACCATACTGTGGAGTACCAGCAACAACAGGTACTATCTTGTTTGTTTTTTGCTAGTTCAATGCTTATGTTCAAAGTTTGTGTCTGTTTGCTCTCG CCGGTGATTCGTTACTATCGGTTGCTTGTGAAGTTTAGTTATTTTGCAATCCAAATTCTTGAACCTAGTATCTTTAGTCATAGTTGTTATCTATAG
AA sequence Show only first row Show all	>Lus10036699 pacid=23171027 polypeptide=Lus10036699 locus=Lus10036699.g ID=Lus10036699.BGIv1.0 annot-version=v1.0 MASTPVPESADGPVLNLINKRLRALRKKQNRIIQMEESLAQGKPLNKEQEEVLRSKPSVTASIDELEKLRQPLSVAVSEEIDLAIKNIKAPEPAEKNGDV EQVEKEKEGSDPKSDDAIESMVGDLLNLLYFGALFDVKSQNDFTATMLTRTHERGCCLTYDYVTDDATDLLSEKDLDLISSLSGLLVSRPLDSSLSHKNA LQRCVEHAKLWLANSDSSLDHNASVSYAGLRERLNKIMASDYFTTTPERKAPVEVGNFGSFQVPVQVEDHTVEYQQQQVLSCLFFASSMLMFKVCVCLLS PVIRYYRLLVKFSYFAIQILEPSIFSHSCYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27090			glycine-rich protein (.1)		Lus10036699 [exp]	0	1
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	3.3	0.9105
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017570 [exp]	3.5	0.8944
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10014604 [exp]	6.0	0.8990
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	10.2	0.9090
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	13.5	0.8910
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	15.8	0.8892
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	17.7	0.8886
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	22.5	0.8886
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	23.1	0.8925
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	23.2	0.8897

Compare expression of checked genes

Lus10036699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.