Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 893 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037223 [exp] 1421 / 0 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10002849 [exp] 891 / 0 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10027814 [exp] 879 / 0 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 430 / 9e-138 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 219 / 1e-64 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034800 [exp] 1063 / 0 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.016G119300 [exp] 900 / 0 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.006G102000 [exp] 898 / 0 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10036700 pacid=23171071 polypeptide=Lus10036700 locus=Lus10036700.g ID=Lus10036700.BGIv1.0 annot-version=v1.0 ATGCCATCTCAGATCGCTCGCAACTCGGCCAGGTTAACAGATTGCGAGCCAATCCAACCACAAAATCCTGCAATCCACAACCCATTCTCCTCTCGTAATG CTCATATCCGACTCCAAGTGGCTGCCATCAGATTAGCTTTCAATCAAAGACTTTGCATAAGAATAGTCTTATTGAATAACACATTATTCCAAATTCTTAT TCCAACAATAAGTTTGGGCCTGAGCCTGGGAACTACTGGCCCAAAGAACCGCATACGTGCACTTGCTTTGCTTCTCCCTTTTTACAGTGTCGAGTCTCAA CTTCTACTATACAGCTTAGCTCACTCACTCGTTTTTTTTACTTTCACCCTGGGTGACTCAGCTCGGAACTCGCAGCAGGAAAAACCCCTCTTCATCACTC CTCCCTTCAAATCCTTACACCCCGCCGGAATCCCTCTCATTCTCCACTTCGCCGCTGCTACCCTACCGAGGAGCCACGCGATGGACTCCTCTTCGCCGAC GGCGTCGTCTTCTTCTTCTCCTCTCCACCTCGCCATGGCAGCGCTAGTTGGAGCTTCGTTCATGGCGATATCAGCCTTCTTCATCCACAAGCGCTCCGTC GACCAGGTCCTCGATCGTCTCATCGAACTCCGCCGCGTCAAGAAACCTAGCGCCACCAACGCGGCCACCATTAGCCTTCGGCGCTCTTTGGAGGAGGAGG ATGATTTGATGGAGAATCCAGAAGAGGAGGACGAGGTGGAGTACGAATCGGAAGTAGTAGCCCCAGTGGAGCGGAGCATGCTGGAAGATAGCAGCGAACA GCGTGGATATAGTAGTATATCATGCTCGTTGCCTAATAAGGCGGTGATTAACACCTGGTTTGGCGACGCCGTCGATCCTTCGAGGAGAAATGAGGTCGAC AATATTCCTCCTGGGCTTCAGCCTTTGCGTACAGCTTCTTCACGGGACGGGGAGAATAGATGCATTAGTTACTCTGGATCAATGACAAGGATGGCATCTG TGGGGAGGATTGCAGGAGCAACTCCTAGATCACCTGCGGGCAATGCGTATGAGAGTTTGGGGGATTCTGAGGATGAAGGAACAGAATTTGCCAATGAGGA TGATGATCCTGATGCAAGACTGCAAAGTGGAGCTGGCGACCAGAACTCCTGTCAAGAGCAAAATAATGCATACGCTGGGGATGGATCCAAAGCGGGCTCA GTCCATAGCTATGGAAAAGAGATGGAAACCATTATAGTTCACCCGGTTGAGAATGATTCATGCATTGCGAGTTTACTTCCGAGGACTATTGTACACGGTT TCATGCTTTTCATCTTCCGTGCAAAATTTCTTTGCTCAGACTCCATAAACGCGGAAGAAGAAGAGGTAAGGAAGTTGCTCCGCGAGTGCCTGGATCTGCG CAGTAAGTATGTCTATAAGGAGATCGTTGCTCCTTGGACGAAGGTAGCAGAGAAAGTATCTGATACCCTACAGGCAAAGTCAGATCCATTTCATTTTGAG CCTGTTTCAGCAACCGAGCATCATTTTAGAATGGAAGATGGAGTAGTACGTGTTTACGTCACAAAAAACGATAATGTGGAACTTTTTCCAGTTGCCAGTG CGACAACTTTCTTTACTGATATGCATCACATCATGAAAGTGATGTCTGTTGGAAATGTTCGAACTACATGCTATCACAGACTACGATTCCTTGAGGAGAA GTTCCGCCTTCATCTGTTGGTAAATGCAGACAGGGAATTCTTGGCTCAGAAGGGGGCACCTCACCGTGACTTCTATAATATCAGAAAAGTTGACACACAC GTGCATCATTCTGCTTGCATGAACCAGAAGCATTTGCTCCGCTTCATCAAGTCTAAGCTAAAAAAAGAACCAGATGAGGTTGTTATTTTCAGAGACGGGT TGTATATGACTCTGAAGGAAGTTTTTGAAAGTTTGGACTTGACAGGATACGACTTGAATGTTGATTTGTTGGACGTCCATGCCGATAAGACTACCTTTCA CCGATTTGATAAGTTCAATCTCAAATATAATCCTTGTGGACAGAGCAGACTGAGAGAGATTTTCTTAAAGCAGGATAATCTCATCCAAGGGCGATTCTTA GCAGAAGTAACTAAAGAAGTTCTAGCTGATCTTGAAGCAAGCAAATACCAGATGCTGTTTGGGTTTTCGTGCATACTTATCTTTTGTCTTTCCTTCAACG AGCAGCTCCCACGGCTGTACAACGTGTACAAGGAGATGGGAATAGTTAACTCTTTCCAGAATATTCTTGACAACGTCTTCCTTCCATTATTTGAAGTCAC CGTGGATCCGAACTCCCATCCTCAACTCCATATGTTTCTTATGCAGGTCGTGGGATTTGATCTTGTCGATGATGAGAGTAAACCAGAAAGGCGTCCAACA AAGCATATGCCAAAACCAGCTGAATGGACGAATAAGTTCAATCCAGCATACTCCTACTACACCTATTACACCTATGCTAACTTGTATATCCTTAATAAGC TCCGTGAATCGAAAGGGCTACCAACAATAAAGTTGAGGCCACACTGTGGAGAGGTTGCTATTTTCTTGATTAATCGTCTCTGGCCTGTTACTGTCATTAA AATCATCAAGTTTCTAATCATGAACAATCTTCAGGCTGGCGATATCGATCATTTGGCTGCTGCATTCCTTCTGTGCCAGAACATCTCTCATGGCATCAAC CTGCGAAAATCCCCTGCTTTGCAGTATTTGTATTACCTTGCTCAGGTTGGCTTGGCAATGTCGCCACTGAGCAACAATTCCCTGTTTCTGGATTATCACC GCAATCCATTCCCCATCTTCTTCCAGCGTGGTATGAATGTTTCGCTCTCCACCGACGATCCTCTGCAGATTCAGTTAACCAAAGAACCTCTGGTTGAAGA GTACAGTGTTGCAGCAAAGGTGTGGAAGCTCAGTTCATGCGATCTCTGCGAGATAGCAAGGAACTCCGTCTACCAATCTGGATTCTCCCACGCAGCAAAG GAGCATTGGCTTGGAAGCGACTATTACTTGCGAGGACCGGAAGGAAACAACATTCACAAGACGAACGTGCCCAATATCAGAATCACCTTCCGACACGAGA CATGGAAGGAAGAGATGCAGTATGTATACTCGGGACGATGCAGGTTCCCTACAGAAGTTGAGCTTTGA
AA sequence Show only first row Show all	>Lus10036700 pacid=23171071 polypeptide=Lus10036700 locus=Lus10036700.g ID=Lus10036700.BGIv1.0 annot-version=v1.0 MPSQIARNSARLTDCEPIQPQNPAIHNPFSSRNAHIRLQVAAIRLAFNQRLCIRIVLLNNTLFQILIPTISLGLSLGTTGPKNRIRALALLLPFYSVESQ LLLYSLAHSLVFFTFTLGDSARNSQQEKPLFITPPFKSLHPAGIPLILHFAAATLPRSHAMDSSSPTASSSSSPLHLAMAALVGASFMAISAFFIHKRSV DQVLDRLIELRRVKKPSATNAATISLRRSLEEEDDLMENPEEEDEVEYESEVVAPVERSMLEDSSEQRGYSSISCSLPNKAVINTWFGDAVDPSRRNEVD NIPPGLQPLRTASSRDGENRCISYSGSMTRMASVGRIAGATPRSPAGNAYESLGDSEDEGTEFANEDDDPDARLQSGAGDQNSCQEQNNAYAGDGSKAGS VHSYGKEMETIIVHPVENDSCIASLLPRTIVHGFMLFIFRAKFLCSDSINAEEEEVRKLLRECLDLRSKYVYKEIVAPWTKVAEKVSDTLQAKSDPFHFE PVSATEHHFRMEDGVVRVYVTKNDNVELFPVASATTFFTDMHHIMKVMSVGNVRTTCYHRLRFLEEKFRLHLLVNADREFLAQKGAPHRDFYNIRKVDTH VHHSACMNQKHLLRFIKSKLKKEPDEVVIFRDGLYMTLKEVFESLDLTGYDLNVDLLDVHADKTTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL AEVTKEVLADLEASKYQMLFGFSCILIFCLSFNEQLPRLYNVYKEMGIVNSFQNILDNVFLPLFEVTVDPNSHPQLHMFLMQVVGFDLVDDESKPERRPT KHMPKPAEWTNKFNPAYSYYTYYTYANLYILNKLRESKGLPTIKLRPHCGEVAIFLINRLWPVTVIKIIKFLIMNNLQAGDIDHLAAAFLLCQNISHGIN LRKSPALQYLYYLAQVGLAMSPLSNNSLFLDYHRNPFPIFFQRGMNVSLSTDDPLQIQLTKEPLVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHAAK EHWLGSDYYLRGPEGNNIHKTNVPNIRITFRHETWKEEMQYVYSGRCRFPTEVEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	0	1
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	2.6	0.8446
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	3.5	0.8340
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	4.0	0.8254
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015201 [exp]	4.9	0.8163
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	5.2	0.8317
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	6.5	0.8238
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	8.0	0.7739
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	8.1	0.8023
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	8.5	0.7867
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	13.7	0.7946

Compare expression of checked genes

Lus10036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.