Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53350 665 / 0 CLPX CLP protease regulatory subunit X (.1) AT1G33360 569 / 0 ATP-dependent Clp protease (.1) AT5G49840 496 / 2e-168 ATP-dependent Clp protease (.1) AT2G45500 47 / 3e-05 AAA-type ATPase family protein (.1.2) AT5G19990 47 / 5e-05 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G52882 47 / 5e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G02450 47 / 5e-05 cell division protein ftsH, putative (.1) AT1G79560 47 / 6e-05 EMB36, EMB156, EMB1047, FTSH12 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) AT5G20000 46 / 6e-05 RPT6A AAA-type ATPase family protein (.1) AT1G64110 46 / 8e-05 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037222 [exp] 590 / 0 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1) Lus10040561 [exp] 562 / 0 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1) Lus10000933 [exp] 551 / 0 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1) Lus10010691 [exp] 463 / 5e-156 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1) Lus10038001 [exp] 53 / 6e-07 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 53 / 7e-07 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10024692 [exp] 49 / 1e-05 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10039722 [exp] 48 / 3e-05 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10028752 [exp] 48 / 3e-05 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015600 [exp] 721 / 0 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1) Potri.015G012900 [exp] 716 / 0 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1) Potri.013G089500 [exp] 596 / 0 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1) Potri.004G229400 [exp] 531 / 0 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1) Potri.013G151600 [exp] 50 / 5e-06 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.014G071900 [exp] 48 / 2e-05 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G026900 [exp] 48 / 3e-05 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G133700 [exp] 47 / 3e-05 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 47 / 4e-05 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 47 / 4e-05 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10036701 pacid=23171125 polypeptide=Lus10036701 locus=Lus10036701.g ID=Lus10036701.BGIv1.0 annot-version=v1.0 ATGGTTAGCAAACCCCTCGTCAATTCAGAGCACACAACTCGATTGATAACCAGCTCCCCTGCGAGCAACTACTTCAGCGAAGGGTGTTCTACTGTTGTAC TTCTCCCTCCGTCTGCATCCATGTGGCCATTCTCTGCGGTTGCTGCAGCTCTCCGATCGAAGCACACCAAAGTGGCGGCCTCCTTCACAATCTCCAACTT CATGTACTCATTGCTCAGATACCCACACTCCAGCAGTCGCATATCTTCTGCCTATTATTCTACTGCCCGCCGCTCCAAATGGAGCGATTACTACACTGCC AGACCCTACCACTTCACTTCCTTCAAGCCTGTTTCCCTCTGCGGCGAACTTGTTGATAGGAGTTTCTGCGTGTTTGAGAGCGGTAAGGGTTTCCACAGAA ATTGGGGCGAGAAATTGACCTCTTCTTCTAGTAATACTAATGGGTCCAACTATGGGGAGCCGCCGGAGGTGTGGCAGCCTCCTTCTTCAGCTCCCGGTGA TGGGATTTCGAAAGCGAGTGAGTCAAGTTTGAATGCTCTCCAGGGAGACAGAGGTGGATCGGGTTCTTCTGGGGCCAATTTGAAAGACGGCTCCTGGGGT GGAGCCAATATGGGGAACACTTTCCCGACACCCAAGGAGATTTGTAAAGGTCTGGATAAGTTTGTGATCGGTCAAGAAAGGGCAAAGAAGGTGCTTTCTG TAGCAGTGTACAATCACTACAAGAGGATCTATCATGAAAATGAAACAATCCAGAGTCCTTTTCATGTTGAGGTTGATCTAGTACGGTGCAAGTTTGATTT GGAGTGTGCCTTTTTTCCTATCCATAACACAGCCATTACAACATTGAATGTTAGGTCTGCAGGAGAGGCAAGTAACAACAAGCTAGGTATTATGGATGAT GATACAGTGGAGCTAGAGAAAAGTAATATTCTACTGATGGGGCCAACTGGATCCGGGAAAACATTACTTGCTAAAACCATGGCACGGTTCGTCAATGTAC CTTTTGTTATAGCAGATGCGACTACATTGACTCAGGCAGGGTATGTTGGAGAAGACGTGGAGTCAATATTATATAAGCTTCTTGCGGTTGCTGATTATAA TGTTGCAGCTGCTCAGCAAGGCATCATATACATAGATGAAGTGGACAAAATCACAAAAAAGGCGGAGAGCGTTAACCTCAGTCGAGATGTATCAGGAGAG GGTGTTCAGCAGGCATTGCTTAAGATGCTCGAAGGAACTATTGTTAATGTTCCAGAGAAGGGAGCTAGAAAGCATCCTAGGGGTGACAATATTCAGATCG ACACAAAGGATATACTCTTTATTTGTGGTGGTGCTTTTATCGACCTGGAAAAAACCATTTCTGAAAGGCGGCAAGATTCATCTATCGGGTTTGGTGCTCC AGTACGTTCAAACATGAGAACCGGTGGTGTAACAAGTGCTACTGTAACATCATCCTTGTTGGAAACTGTTGAAAGTGGTGATCTTATTTCGTACGGCTTG ATACCTGAATTTGTTGGAAGATTTCCTGTCCTTGTCAGTTTGTCAGCTCTCACAGAAGACCAGCTTGTGCAGGTTCTGACTGAGCCCAAGAATGCCCTTG AAAAACAATACAAGAAAATGTTTGAAATGAACGATGCTAAGTTACATTTTACGAAAGAAGCTGTTAGATTAATTGCTAGGAAAGCCATAACCAAAAACAC AGGGGCTCGTGGCTTGCGGTCAATTCTAGAGAATATCTTGATGGATTCCATGTATGAGATTCCTGAAATGAGAAGAGAGGAGGATATGATAGATGCAGTG GTAGTGGACGAAGAGGCGGTTGGAAGCGGAGCCAAGATCCTCTACGGTAAGGGCGCATTGGACCGTTACCTAGCTGGACAACAGAAACCACAAGGATCGG AGACGAGTGCGGAAGTTGGTTATTATAAGCATTACCATTTAGCTCCTGCCAAACATATTTGGAAATACCATCTCGCATCGCCACGGATTCATGTGAGTGA TAGAACGACTCATTATCTTGATGGGCATCTGCCAGACCAGTCGTGCCATGGCGATAACACCGACTCGCTCTGTCAGCTTCAATGA
AA sequence Show only first row Show all	>Lus10036701 pacid=23171125 polypeptide=Lus10036701 locus=Lus10036701.g ID=Lus10036701.BGIv1.0 annot-version=v1.0 MVSKPLVNSEHTTRLITSSPASNYFSEGCSTVVLLPPSASMWPFSAVAAALRSKHTKVAASFTISNFMYSLLRYPHSSSRISSAYYSTARRSKWSDYYTA RPYHFTSFKPVSLCGELVDRSFCVFESGKGFHRNWGEKLTSSSSNTNGSNYGEPPEVWQPPSSAPGDGISKASESSLNALQGDRGGSGSSGANLKDGSWG GANMGNTFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHENETIQSPFHVEVDLVRCKFDLECAFFPIHNTAITTLNVRSAGEASNNKLGIMDD DTVELEKSNILLMGPTGSGKTLLAKTMARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAVADYNVAAAQQGIIYIDEVDKITKKAESVNLSRDVSGE GVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRSNMRTGGVTSATVTSSLLETVESGDLISYGL IPEFVGRFPVLVSLSALTEDQLVQVLTEPKNALEKQYKKMFEMNDAKLHFTKEAVRLIARKAITKNTGARGLRSILENILMDSMYEIPEMRREEDMIDAV VVDEEAVGSGAKILYGKGALDRYLAGQQKPQGSETSAEVGYYKHYHLAPAKHIWKYHLASPRIHVSDRTTHYLDGHLPDQSCHGDNTDSLCQLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	0	1
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	1.0	0.9146
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	2.0	0.9087
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	2.8	0.9145
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	4.2	0.9040
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	4.2	0.9144
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	4.6	0.8926
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	4.9	0.9053
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10025575 [exp]	5.9	0.8780
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	6.0	0.9004
AT1G05410			Protein of unknown function (D...		Lus10021915 [exp]	6.0	0.8953

Compare expression of checked genes

Lus10036701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.