Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 110 / 3e-30 Putative membrane lipoprotein (.1) AT5G50290 52 / 1e-08 unknown protein AT3G17350 52 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037235 [exp] 215 / 3e-71 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10036687 [exp] 207 / 5e-68 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037236 [exp] 140 / 2e-43 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1) Lus10036906 [exp] 70 / 3e-15 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037078 [exp] 69 / 1e-14 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10043098 [exp] 52 / 2e-08 AT3G17350 334 / 7e-115 unknown protein Lus10042105 [exp] 44 / 7e-06 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 44 / 1e-05 AT5G50290 368 / 2e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040500 [exp] 137 / 2e-40 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 85 / 2e-20 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 73 / 4e-16 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 71 / 2e-15 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.008G099800 [exp] 49 / 1e-07 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 48 / 4e-07 AT3G17350 339 / 4e-117 unknown protein Potri.015G078700 [exp] 45 / 3e-06 AT5G50290 387 / 4e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036702 pacid=23171181 polypeptide=Lus10036702 locus=Lus10036702.g ID=Lus10036702.BGIv1.0 annot-version=v1.0 ATGGCAATCACTCTCTTTGCATTTCTAGTAGTAGCTCTCACAACATCATCATTCCCTTACATGGTCTCATCAAGCCTGCTAGAATTACTGCGGAACCGTC CCAATCAAGTACCCTTTTGGAACCGGACAGGGCTGTGGCGACCCCGCTTCCACAAGTACGTTACTTGCACCAAAAGCAAGCTCCTTTTCACCTCCCACAC CGGCTCCTACTCCATCACAAACATAGGCTACGCCTCGCAAGTCATCTACATCTCCGACCCTTCCATGTCTACCTGCTCTTGTACTCAGCCCAGCAAAGGG TTCGGACTTGACTGGGACGCGCCCTTCTCCTTCCATGAAAGTACCGTCTTTACCCTCCTCGACTGTGGTCCAAACAACGGCACTCACTTTGACATGTCGG GATCGCCAATCTGCACCTTCCTCTAA
AA sequence Show only first row Show all	>Lus10036702 pacid=23171181 polypeptide=Lus10036702 locus=Lus10036702.g ID=Lus10036702.BGIv1.0 annot-version=v1.0 MAITLFAFLVVALTTSSFPYMVSSSLLELLRNRPNQVPFWNRTGLWRPRFHKYVTCTKSKLLFTSHTGSYSITNIGYASQVIYISDPSMSTCSCTQPSKG FGLDWDAPFSFHESTVFTLLDCGPNNGTHFDMSGSPICTFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10380			Putative membrane lipoprotein ...		Lus10036702 [exp]	0	1
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10031008 [exp]	5.3	0.6019
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	17.7	0.5238
AT2G25010			Aminotransferase-like, plant m...		Lus10003764 [exp]	20.5	0.5286
AT5G40250			RING/U-box superfamily protein...		Lus10008797 [exp]	22.9	0.5286
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	29.3	0.5219
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	29.5	0.5310
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10017302 [exp]	33.0	0.4994
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	33.1	0.5090
AT2G06090			Plant self-incompatibility pro...		Lus10029389 [exp]	33.5	0.5033
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10025149 [exp]	35.4	0.5033

Compare expression of checked genes

Lus10036702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.