Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69870 629 / 0 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 552 / 0 NRT1.6 nitrate transporter 1.6 (.1) AT1G69860 439 / 7e-148 Major facilitator superfamily protein (.1) AT5G62680 431 / 2e-143 Major facilitator superfamily protein (.1) AT3G47960 421 / 2e-139 Major facilitator superfamily protein (.1) AT1G18880 417 / 9e-139 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G68570 367 / 4e-119 Major facilitator superfamily protein (.1) AT3G54140 365 / 6e-119 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 363 / 4e-118 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G52190 341 / 4e-109 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037221 [exp] 1126 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 435 / 2e-145 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036669 [exp] 425 / 3e-141 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 397 / 9e-131 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10024345 [exp] 386 / 2e-126 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 371 / 1e-120 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 362 / 1e-116 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 357 / 2e-115 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10023663 [exp] 357 / 4e-115 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034700 [exp] 664 / 0 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.017G076800 [exp] 497 / 8e-170 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 487 / 6e-166 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 465 / 3e-157 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 440 / 8e-148 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.006G091600 [exp] 379 / 5e-124 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103200 [exp] 373 / 1e-121 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 372 / 4e-121 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 370 / 1e-120 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 365 / 2e-118 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10036705 pacid=23171220 polypeptide=Lus10036705 locus=Lus10036705.g ID=Lus10036705.BGIv1.0 annot-version=v1.0 ATGTCAGCCGTCGTTAAAAATCCCTGCGCCAGTCTCCATTACTGGTCGTGCTTCCACGGCAAGGACTCCGATGAGCAGAAGGAGCAGCAGCTCGGCAGTC CAAATTCTCTATCGATTGTCCCGTCGACAGGGACTCTCAAGCTGCCGGAAGACGGCAAGGACGGCAAGAATAAGCCCGGCGGATGGAGAGCCATGCCTTA CGTACTAGGAAACGAGACGTGCGAGAGACTGGCGACGGTGGGACTGTTTGCGAACTTTCAGGTGTACCTAACAAGAGAGTTCCATTTGGAGCAGGCGAAA GCTGCACAGCTACTCAATGTCTGGTCTGGATTCACCAACTTCATGCCGCTGTTGGGGGCTTTCATCTGTGATGCTTACATCGGACGGTTCAAAACCATTG CTTTCTCCGTCTTCGCCCAACTTTTGGGGATGGTGACCATCACGTTAACAGCATGGCTGCCGCACCTCCAGCCACCCAAATGCGACGTCGCTTTAAAGAG CGGTGTCACCTGCCTGGGCCCCACCTCAGGCCAACTGGGAGTCCTACTCACGGGCCTTTGCCTCCTATCCGTAGGGACTGGAGGGATCAGACCCTGCAGC ATCCCGTTTGGGGTCGACCAGTTCGACGCCCGGACGGAAGAAGGGGTGAAAGGGATCAACAGCTTCTTCAACTGGTACTACATGACCTTCACCGTCGTCA TTCTGCTGTCGTTGACGGTGATCGTCTACATCCAGGACTCGTTCAGCTGGGTCGCCGGGTTCGGGATCCCGACTGCTTTCATGATTGTGGCAATCTTCTT GTTCTTTATAGGGAGGAGGATCTACGTCCACGTCAAGCCCGAGGGGAGCGTGTTCTCCGGGATCGCTCACGTGTTCTGCGCCGCTTACAAGAAGCGGAAG CTTAAGCTCGACGACGACGGTGATGACGTTGCTGTTCTTGATGGAAAGTTTTATGATCCGCCGGCTAAAGCTACCGTCATTCACAAGCTCCCCCTCACCA AACAGTTCAGATTTCTTAACAAAGCAGCAGTAATCCAAGAAGGCGAAGTCAACGAACACGGCAAGCCGTCAAACGCGAGGAGCCTAGTCAGCATCCAAGA AGTTGAAGAAGTCAAATGTCTGTTGAAAGTCATACCGGTTTGGTCGGCCGGGATTATAAGCCTGACGGCCATCTCCCAGCAGGGTACGTTCACGGTTTCC CAGGCGATGATCATGGACCGCCACTTGGGACCCAAGTTCGAGATCCCGCCCGGCACAATGACGGTGATATCCCTCATCGTCATCGGCTTGTGGCTCCCCT TTTACGATCGGATCTTGGTCCCGAGGCTGAGGAGGATCACCAAGTACGAGACGGGGATTACGCTCCTCCAGAGAGTGGGGATCGGGATCGTGTTCTCCAT TTTGTCTATGGTTGTTGCGGGGCTGGTGGAGAGGGACAGGCGGGAGTTTGCGAACGCTCACCCCGATTCGCCTCCCTTCTCGGTGATGTGGCTGGCCCCG CATCTGGCCATCATGGGGATGTGCGAGGCGTTTTTGTTCATCGGGCAGATCGAGTTCTTCAACAAGGAGTTCCCCGAGAACATGAGGAGCATCGCGAACG CGCTGTTCTCGGTGTCGTTCGCGATCGCTAATTACTTGAGCAGCGTGCTCATCTCAGTGATTCAGAAGACCACTAGCGGAGGCGGGACGAAACCCGATTG GTTGACGAATGATTTGAACCGGGGGAGGTTGGACCTTTTCTACTTCGTCTTGGCCGGAATGGGGTTGTTGAATTTCTTCTATTTTCTGTTCTGCGCTAGC CGGTACCGGTACAAGACCAAGATGACGATTGTCGATACGGAGGTGGGTGTTGACGGGTCGAAATTGTCGTCGTTTCACGACGTGGAGATGAACCCGGTTA AGGTAGCTAGCTAA
AA sequence Show only first row Show all	>Lus10036705 pacid=23171220 polypeptide=Lus10036705 locus=Lus10036705.g ID=Lus10036705.BGIv1.0 annot-version=v1.0 MSAVVKNPCASLHYWSCFHGKDSDEQKEQQLGSPNSLSIVPSTGTLKLPEDGKDGKNKPGGWRAMPYVLGNETCERLATVGLFANFQVYLTREFHLEQAK AAQLLNVWSGFTNFMPLLGAFICDAYIGRFKTIAFSVFAQLLGMVTITLTAWLPHLQPPKCDVALKSGVTCLGPTSGQLGVLLTGLCLLSVGTGGIRPCS IPFGVDQFDARTEEGVKGINSFFNWYYMTFTVVILLSLTVIVYIQDSFSWVAGFGIPTAFMIVAIFLFFIGRRIYVHVKPEGSVFSGIAHVFCAAYKKRK LKLDDDGDDVAVLDGKFYDPPAKATVIHKLPLTKQFRFLNKAAVIQEGEVNEHGKPSNARSLVSIQEVEEVKCLLKVIPVWSAGIISLTAISQQGTFTVS QAMIMDRHLGPKFEIPPGTMTVISLIVIGLWLPFYDRILVPRLRRITKYETGITLLQRVGIGIVFSILSMVVAGLVERDRREFANAHPDSPPFSVMWLAP HLAIMGMCEAFLFIGQIEFFNKEFPENMRSIANALFSVSFAIANYLSSVLISVIQKTTSGGGTKPDWLTNDLNRGRLDLFYFVLAGMGLLNFFYFLFCAS RYRYKTKMTIVDTEVGVDGSKLSSFHDVEMNPVKVAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10036705 [exp]	0	1
AT4G02920			unknown protein		Lus10042685 [exp]	4.4	0.8889
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	7.2	0.8677
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	7.5	0.8513
AT4G02920			unknown protein		Lus10029640 [exp]	12.5	0.8885
AT4G01935			unknown protein		Lus10010062 [exp]	13.9	0.8701
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	15.3	0.8649
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	15.7	0.8642
AT2G20920			Protein of unknown function (D...		Lus10027826 [exp]	15.7	0.8526
					Lus10026102 [exp]	18.4	0.8387
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10023553 [exp]	18.7	0.8395

Compare expression of checked genes

Lus10036705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.