Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27070 319 / 3e-103 5'-AMP-activated protein kinase-related (.1) AT5G03420 80 / 1e-15 5'-AMP-activated protein kinase-related (.1) AT5G39790 62 / 2e-10 5'-AMP-activated protein kinase-related (.1) AT3G01510 43 / 0.0005 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037220 [exp] 771 / 0 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10030802 [exp] 287 / 5e-90 AT1G27070 204 / 2e-58 5'-AMP-activated protein kinase-related (.1) Lus10013279 [exp] 278 / 5e-87 AT1G27070 198 / 1e-56 5'-AMP-activated protein kinase-related (.1) Lus10028512 [exp] 66 / 1e-11 AT5G39790 297 / 5e-101 5'-AMP-activated protein kinase-related (.1) Lus10004490 [exp] 54 / 2e-07 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 54 / 2e-07 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 50 / 2e-06 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10037504 [exp] 49 / 2e-06 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10041287 [exp] 48 / 8e-06 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194300 [exp] 375 / 8e-125 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.010G034600 [exp] 360 / 4e-119 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.017G125400 [exp] 72 / 1e-13 AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1) Potri.006G123300 [exp] 72 / 4e-13 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1) Potri.009G021600 [exp] 48 / 6e-06 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.001G220800 [exp] 44 / 0.0002 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.008G216800 [exp] 43 / 0.0003 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G029300 [exp] 42 / 0.0009 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036706 pacid=23171098 polypeptide=Lus10036706 locus=Lus10036706.g ID=Lus10036706.BGIv1.0 annot-version=v1.0 ATGCTGTCCGTCACAACCGTCAACACCCATCTCATCCTTTCGCCAAATGCTTTCTCGGGGTTGAGCACTCGTCCATTTCGCATCTGTTGCACGAGAACAG CAGTAATTAAGGCATCGAGGGAGCAAGAAAGGAATCACAATGTTGTTCATCTCCACTGCACAATGCTGATGACGGAGGAAGGACATCATCTGGGGTTTTT CAATCCCAGGATGCGGAGTGTTAGGGATTTTTTCTGGGACTGTGGTGTTAGCAACAATTCGGGGAGTAGTGTAGGAGATTCTTCATTGGAAGATGAAATT TTGGAGTATATGAGGAATTCGGAAGAACCGGGGATGTTTCCGTCGAAGAAACAGTTGATTGGTGCAGGGAGAATGGATCTTGTGGAGGCTATTGTGAAGG AAGGCGGGTGGATGGCTTCAGGGTGGGATTTGGAAGCAGATGAAGGCGAAGGGGAATCAATGGATACTTCGTATTCTTCTGCTTCTTCGAGATCACTAGA AACTGCTGCCGAGGATAATTCTGGGATCGAAGGTATATTGAGTAGATTGGAGATAGAAAGGAGTATGAATTTTGGATTTAAGTTGCCAGAGAGTAGAGAA GATGCTCATGTATGGGGTCAGCAGCATCCTGTGTACGATGAGCCTTCTAAGACCTCTGAAAGTCCGACAGTTCCTGACATAAATGGCAGAATCGACGATT CTCAGGGAATGCCTGGCCACTTCAGACAATGCACAAATGTTAATGGTTTGGAGAACTCAGTTAAGCCTGACGCGTGGAGAACTTGGCATGCACTGAGGGA AGAATCTTCATCTATAGACTCTGAAGCAGGCGACATTGATGCTAAAGAAACTAGAACTGGGAATGAACTGGATACTTCAGGAACCGTTGAGAGCCATAGT AAACATGCAAACAAGAACGCTTACTGTTCTGAAGCAAGGTTGGATCCCATAAGAACTCGGCTTCAGAAAATAGAATCTGAGCTTTCGGCTGTACTGAATG CATTGAAATCAGATGCCAATACAGACGAGTCACACAAGGCTAACGAAAGCGTAACTGGCGACGAGCTTTCGAAACTCAATGATGCTTGGGAGTTCCGCGA AACTGAAATAATGAGTCAGAAGGCCAAGTTGCGGACAATTCGAGCAAAGTTAGCCGTGCTGGAGGGCAGACAGGCGCTTGCAGTAATCGATGCACAAAGA CTCTTAGAACAGAAACAGAAGAGAATCACTGATGTTCATAAGGCTGTACAGCTTCTTCGCACTGTGAGCATAGTCTGGCCTTGTAACAGAGCTTCAGAAG TGTTCTTAACCGGATCGTACGATGGGTGGGCTACCCAGAAGAAGATGGAGAAGTCAATCAGTGGTGTCTTCTCCTTGAACTTGAAACTCTATCCCGGCAA GTACGAGATCAAGTTCATTGCTGATGGTGAATGGAAGACTGATCCCCTGCGCCCCATTGTTAACAATAATGGGTTTGTAAATAATCTCCTCATAATCCAA TAA
AA sequence Show only first row Show all	>Lus10036706 pacid=23171098 polypeptide=Lus10036706 locus=Lus10036706.g ID=Lus10036706.BGIv1.0 annot-version=v1.0 MLSVTTVNTHLILSPNAFSGLSTRPFRICCTRTAVIKASREQERNHNVVHLHCTMLMTEEGHHLGFFNPRMRSVRDFFWDCGVSNNSGSSVGDSSLEDEI LEYMRNSEEPGMFPSKKQLIGAGRMDLVEAIVKEGGWMASGWDLEADEGEGESMDTSYSSASSRSLETAAEDNSGIEGILSRLEIERSMNFGFKLPESRE DAHVWGQQHPVYDEPSKTSESPTVPDINGRIDDSQGMPGHFRQCTNVNGLENSVKPDAWRTWHALREESSSIDSEAGDIDAKETRTGNELDTSGTVESHS KHANKNAYCSEARLDPIRTRLQKIESELSAVLNALKSDANTDESHKANESVTGDELSKLNDAWEFRETEIMSQKAKLRTIRAKLAVLEGRQALAVIDAQR LLEQKQKRITDVHKAVQLLRTVSIVWPCNRASEVFLTGSYDGWATQKKMEKSISGVFSLNLKLYPGKYEIKFIADGEWKTDPLRPIVNNNGFVNNLLIIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27070			5'-AMP-activated protein kinas...		Lus10036706 [exp]	0	1
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	7.3	0.8141
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	11.0	0.7868
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	12.7	0.7686
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10021748 [exp]	15.2	0.7582
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019083 [exp]	28.5	0.7762
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031299 [exp]	32.1	0.7761
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	35.2	0.7709
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031298 [exp]	39.0	0.7633
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	47.5	0.7507
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10035845 [exp]	50.0	0.7421

Compare expression of checked genes

Lus10036706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.