Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27060 368 / 8e-126 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 149 / 2e-40 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 140 / 4e-36 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 137 / 8e-35 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT3G23270 125 / 6e-31 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 121 / 2e-29 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 111 / 3e-26 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 110 / 8e-26 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 105 / 2e-24 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G16040 102 / 4e-24 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037219 [exp] 634 / 0 AT1G27060 424 / 1e-147 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10010038 [exp] 139 / 5e-40 AT1G27060 134 / 1e-38 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 147 / 1e-39 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 147 / 2e-39 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10008730 [exp] 137 / 7e-38 AT1G27060 132 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10012474 [exp] 123 / 3e-33 AT1G27060 89 / 2e-21 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10009701 [exp] 131 / 9e-33 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 130 / 1e-32 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10037192 [exp] 119 / 8e-29 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G107000 [exp] 430 / 5e-150 AT1G27060 446 / 1e-156 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 143 / 4e-38 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 138 / 2e-35 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 134 / 8e-34 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.008G167500 [exp] 120 / 3e-29 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 117 / 5e-28 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.003G197600 [exp] 113 / 7e-27 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 112 / 1e-26 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 110 / 7e-26 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 108 / 2e-25 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10036707 pacid=23171307 polypeptide=Lus10036707 locus=Lus10036707.g ID=Lus10036707.BGIv1.0 annot-version=v1.0 ATGATCTCCTCCCTCCGCTCCTCCGCGCGCAGCCGCTTGCCCNNNNNNNTCCTCCCTAGGCTCCTCCGTCCTCTGCTGCTCACCGCCGCCGAACTAATCT CCATGCTCGCCTGCGGCGGAGCTCACGTTATTGCTTTGACGACAGGTGGAAGAGTACTAACATGGGGAAGAGGCACATCTGGCCAGCTCGGCCATGGAGA TACGTTGACCTGCTTAGAGCCAAAGATTGTGGAGTCTTTGAAGAATGATGTAATAGTAACTCACGTCTCTGCTGGATGGAGCCACTCTGGATTTGTTTCA GATGAAGGGTGTCTTTTCACTTGTGGGGATGGCTCATTCGGCCAGCTTGGCCATGGGGATCAATCAAATTGCAGCACTCCTGTTAAAGTCTCTTACTTTG ACAGTAGTAAGCATGTTGATCAAATGGCTTGCGGGATGCGACATTCACTCGTCTTGCTCAAGGGTAGTTTGGGGAACCAGGTTTATGGTTTTGGCTCTGG GAAGCGCGGCCAGTTAGGTGTTTCGGTGGAGAAGCTCAAATTAGCGAGTCTTCCTCGAGTTACTTTGGGGTTCGAAGACGTTGAGATTGCTAGTATTAGC GCAAATGGTGATCATAGCGCAGCATTGTCCAGTGATGGGAAGCTTTTTACCTGGGGAAGAGGGTTCAGTGGTTCTCCAGGTAGCAATGTCCCTTGCTGTT CGTTTCCATCGTTGCGGTTCAATGGAGTTGCTCTTGGATGGAATCATGCCTTGCTATTGAACGGTGATGGTGAAGTTTACATGCTCGGTGGCAATCGACA TGGAGTGCTTAGTGACGCGGAGAAAATGATGAACACAGCAGCAAACCATCTTCCCGATTCTTCGACTGAGGCTGGTTTAGAGAGAGTGTTGAATCCTGGT GGATCGAAGGTTGTTCAGATTGCAGCTGGATCAGAGCATTCTGCTCTTGTTACAGTCGATGGAACTGTAATGACATGGGGATGGGGCGAACACGGTCAGC TTGGACTAGGGAGCACAAGCGATGAAACGAATCCACAACCGATAAGAAATATTGAGAAGGAAGTCGCCATCTCCAGTGTTTATTGTGGAAGTGGATTCAC CAATCTATTGCGATTATCTCGTAAAAATGGCAATAGATGGCCAATCGATACAAAACGGACAATATCAGACGGCATTTGTCATCTATCCATCAAGCAATCG AGAAATTTGATATGA
AA sequence Show only first row Show all	>Lus10036707 pacid=23171307 polypeptide=Lus10036707 locus=Lus10036707.g ID=Lus10036707.BGIv1.0 annot-version=v1.0 MISSLRSSARSRLPXXXLPRLLRPLLLTAAELISMLACGGAHVIALTTGGRVLTWGRGTSGQLGHGDTLTCLEPKIVESLKNDVIVTHVSAGWSHSGFVS DEGCLFTCGDGSFGQLGHGDQSNCSTPVKVSYFDSSKHVDQMACGMRHSLVLLKGSLGNQVYGFGSGKRGQLGVSVEKLKLASLPRVTLGFEDVEIASIS ANGDHSAALSSDGKLFTWGRGFSGSPGSNVPCCSFPSLRFNGVALGWNHALLLNGDGEVYMLGGNRHGVLSDAEKMMNTAANHLPDSSTEAGLERVLNPG GSKVVQIAAGSEHSALVTVDGTVMTWGWGEHGQLGLGSTSDETNPQPIRNIEKEVAISSVYCGSGFTNLLRLSRKNGNRWPIDTKRTISDGICHLSIKQS RNLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27060			Regulator of chromosome conden...		Lus10036707 [exp]	0	1
					Lus10030382 [exp]	6.5	0.7377
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	7.9	0.7530
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	16.2	0.7391
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006174 [exp]	17.5	0.6815
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	19.3	0.7238
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10004744 [exp]	19.8	0.6818
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	24.1	0.6801
AT1G69550			disease resistance protein (TI...		Lus10005807 [exp]	30.0	0.6993
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	34.5	0.7209
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10041104 [exp]	34.9	0.6489

Compare expression of checked genes

Lus10036707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.