Plant FIBer expression Database

Lus10036708 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27050 152 / 2e-46 HD ATHB54 homeobox protein 54 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G034500
[exp]
147 / 1e-44 AT1G27050 134 / 1e-39 homeobox protein 54 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence
>Lus10036708 pacid=23171252 polypeptide=Lus10036708 locus=Lus10036708.g ID=Lus10036708.BGIv1.0 annot-version=v1.0
ATGAGCCGCAAGAGAGACAAGCCCTACTTCTCCGGCAACGACCGCGCTCCTTTCGCCAAGCGCCACCGCCCCCAGCCTCCGCCACGGGATGGAACCTCGG
AAACCAGCTCAAATTCCACGCCGCAGCATCCCGCAGCGGTTGTGGTGATAGGATTATCCCACGATTGCTCCGTCCTCGACCTCAAGGCACGGTTCCAGAT
CTACGGCGCAATCTCCCGCATCCGTATCGACGGCGTTGGATACATCACGTTCCGGTCTAGGGAATCCGCCGAAGCTGCCGTCGCCGCCGCCCTCGACGAT
AGTTTCGGAATCACCGTTGATTCCAAACGGGTACAGGTGTTGTGGGCAACAGATCCAATGGCGAAATGGAGGGAAGGGATTGAGTTAGGGATCAACAAGA
AGAAAGATAGCAGTAGCTCAGCTTCAAAGCTTGTGAGGGGAGAGTTGCCACTGCGCAGACATGGGAGAGGGAAGAAGCTTGCTTCAGCTATTGTAAACCC
AAGAATTGGTAATGACATTATTAGCAGCAGCTCTGATGCAGGTCCTTCTACTACGACGACATTGGGCGTGCCATTCAGAGGCAGAGAAATCGTTGCTTAC
GACGATATTCTGTAG
AA sequence
>Lus10036708 pacid=23171252 polypeptide=Lus10036708 locus=Lus10036708.g ID=Lus10036708.BGIv1.0 annot-version=v1.0
MSRKRDKPYFSGNDRAPFAKRHRPQPPPRDGTSETSSNSTPQHPAAVVVIGLSHDCSVLDLKARFQIYGAISRIRIDGVGYITFRSRESAEAAVAAALDD
SFGITVDSKRVQVLWATDPMAKWREGIELGINKKKDSSSSASKLVRGELPLRRHGRGKKLASAIVNPRIGNDIISSSSDAGPSTTTTLGVPFRGREIVAY
DDIL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27050 HD ATHB54 homeobox protein 54 (.1) Lus10036708
[exp]
0 1
AT5G44170 S-adenosyl-L-methionine-depend... Lus10018640
[exp]
2.0 0.8351
AT1G06270 Pentatricopeptide repeat (PPR)... Lus10017675
[exp]
3.2 0.8295
AT3G47620 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea ... Lus10013814
[exp]
4.9 0.8175
AT3G13677 unknown protein Lus10015813
[exp]
7.1 0.7921
AT4G19190 zinc knuckle (CCHC-type) famil... Lus10035690
[exp]
7.7 0.8003
AT1G27435 unknown protein Lus10012558
[exp]
8.7 0.7441
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Lus10024413
[exp]
11.3 0.7748
AT1G64090 RTNLB3 Reticulan like protein B3 (.1.... Lus10024687
[exp]
11.6 0.7805
AT3G07260 FHA SMAD/FHA domain-containing pro... Lus10038196
[exp]
13.0 0.7836
AT5G44170 S-adenosyl-L-methionine-depend... Lus10039876
[exp]
15.6 0.7908

Lus10036708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.