Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69850 774 / 0 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 696 / 0 Major facilitator superfamily protein (.1.2) AT5G62730 630 / 0 Major facilitator superfamily protein (.1) AT1G59740 357 / 2e-116 Major facilitator superfamily protein (.1) AT2G02040 357 / 3e-116 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G25280 352 / 5e-115 Major facilitator superfamily protein (.1) AT3G25260 347 / 2e-113 Major facilitator superfamily protein (.1) AT1G33440 344 / 6e-111 Major facilitator superfamily protein (.1) AT5G01180 338 / 3e-109 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G21670 338 / 6e-109 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037217 [exp] 1063 / 0 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 832 / 0 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 827 / 0 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 707 / 0 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 434 / 7e-146 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 409 / 2e-136 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10032876 [exp] 397 / 6e-132 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 390 / 4e-129 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10025881 [exp] 379 / 3e-125 AT3G25280 558 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034300 [exp] 810 / 0 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.012G070700 [exp] 702 / 0 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.004G064100 [exp] 422 / 2e-141 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.014G036200 [exp] 421 / 4e-141 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.002G129500 [exp] 411 / 2e-137 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.004G229000 [exp] 377 / 1e-123 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.002G249100 [exp] 374 / 2e-123 AT3G25280 498 / 7e-173 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 372 / 8e-122 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 372 / 1e-121 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 355 / 1e-115 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10036710 pacid=23171354 polypeptide=Lus10036710 locus=Lus10036710.g ID=Lus10036710.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCCCCCGTGGGCGCCGCCGGCGGGAGATGGGAAGGGTACGTGGACTGGAGGAACCGGCCGGCCGTTCGTGGCCGCCACGGTGGCATGCTCC CCGCCTCCTTCGTTCTCGGGGCGGAGGTGTTGGAGAACTTGGCGTATTTGGCGAATGCGAGCAACTTGGTGATGTACATGTCGGAGTACATGCACTTTAG CCCGTCCAAGTCGGCAAATAATGTCACGAACTTCATGGGGACTGCTTTCCTTTTGGCTCTCCTCGGTGGCTTTCTCTCTGATGCCTTTTTCACCACTTAT CAAATCTACCTCATCAGTGCTTCCATCCAATTCCTGGGTTTGGTGATTCTAACAGTGCAAGCAAGGTCACCCTCACTGAAGCCAGAGCACTGCATCAGCC ATGACCCAACATGCCAGCAAGTAGAAGGAGGCCAAGCTGCAATGCTATTCATAGGCCTTTACTTAGTGGCACTCGGAGTTGGCGGCATCAAGGGCTCCCT GCCCTCACATGGCGCCGAGCAATTCGACGACAGCACCCCCAAGGGAAGGAAGCAGAGGTCGACATTCTTCAACTACTTCGTCTTCTGCTTGGCATTCGGC GGATTGATCGCTGTCACCTTCGTGGTCTGGCTCGAAGACAACAAAGGTTGGGAGTGGGGGTTTGGATTCTCCACCATTTCTATTTTCTTGTCCATCCCTG TCTTCCTCTCCGGCTCCCCGGTCTACCGGAGCAAGATCCCCTCTGGGAGCCCTCTCACCACCATTTCCAAAGTTCTGGTAGCAGCAGCAATCAACAGGTG TGTGAACAGAGCTCCAAGCAATGCAATAGCAAACTTAGCAGCAAGTCCATGCAACCCAACAGACAAACCAGCATCAACAGAGCAAGGAATCACCAATTCC AATAATCTGACACAGCCAACCAAGAGCCTCACATGCTTAAACATTGCAGTGATGAACAAACCCTTTGAATGCACAGTCCAACAAGTGGAAGATGTGAAAG TTGTGATCAAAGTGCTCCCAATTTTCGCCTGCACAATCATGCTGAACTGCTGCCTAGCTCAGCTCTCAACATTCTCAGTTCAACAAGCAGCCACAATGGA CACCAAGCTAGGCTCCCTCAACATCCCACCAGCTTCCCTCCCCATATTTCCAGTCCTCTTCATCATGATCCTTGCACCGATCTACGACTACTTCATCGTG CCATTCGCCAGGCGAGTGACCAAATCCGAGATGGGGATCACTCACCTCCAACGAATCGGGGTCGGATTGGTCCTTTCCATCCTAGCCATGGCAGTTGCAG CGCTTGTGGAAGTCAAGAGAAAAAGGGTAGTTGCTAGTATTGTAACAGATTCAACTGAGCCATTGCCAATCACATTCTTGTGGGTGGCATTTCAGTACTT GTTCTTGGGATCGGCCGATCTGTTCACACTCGCAGGGCTGCTCGAGTTCTTCTTCTCGGAGGCGCCTTCGAGGATGAGGTCGTTGGCTACTTCGTTGTCG TGGGCTTCACTGGCTATGGGGTACTACCTTAGCTCTATGATCGTGTCGTTGGTGAACAATGTGACTGATAAGTGGCTGTCAGGGAAGAACATCAACCACT ATCACTTGGAGAGATTCTACTGGATGATGTGTCTCCTTAGTGCCTTGAACTTCTTGCATTACCTTCTCTGGGCTTGCCGGTACAAGTACAGATCGACTAG TACTGGTACTGCTTCTGGCTAG
AA sequence Show only first row Show all	>Lus10036710 pacid=23171354 polypeptide=Lus10036710 locus=Lus10036710.g ID=Lus10036710.BGIv1.0 annot-version=v1.0 MEEAPVGAAGGRWEGYVDWRNRPAVRGRHGGMLPASFVLGAEVLENLAYLANASNLVMYMSEYMHFSPSKSANNVTNFMGTAFLLALLGGFLSDAFFTTY QIYLISASIQFLGLVILTVQARSPSLKPEHCISHDPTCQQVEGGQAAMLFIGLYLVALGVGGIKGSLPSHGAEQFDDSTPKGRKQRSTFFNYFVFCLAFG GLIAVTFVVWLEDNKGWEWGFGFSTISIFLSIPVFLSGSPVYRSKIPSGSPLTTISKVLVAAAINRCVNRAPSNAIANLAASPCNPTDKPASTEQGITNS NNLTQPTKSLTCLNIAVMNKPFECTVQQVEDVKVVIKVLPIFACTIMLNCCLAQLSTFSVQQAATMDTKLGSLNIPPASLPIFPVLFIMILAPIYDYFIV PFARRVTKSEMGITHLQRIGVGLVLSILAMAVAALVEVKRKRVVASIVTDSTEPLPITFLWVAFQYLFLGSADLFTLAGLLEFFFSEAPSRMRSLATSLS WASLAMGYYLSSMIVSLVNNVTDKWLSGKNINHYHLERFYWMMCLLSALNFLHYLLWACRYKYRSTSTGTASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	0	1
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	2.0	0.8481
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	2.6	0.8577
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	4.7	0.8570
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	7.5	0.8133
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	10.5	0.8557
AT5G22930			Protein of unknown function (D...		Lus10016148 [exp]	13.5	0.7637
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	13.9	0.8106
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	14.7	0.7777
AT4G29110			unknown protein		Lus10014153 [exp]	15.5	0.8364
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	16.0	0.8441

Compare expression of checked genes

Lus10036710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.