Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02710 387 / 5e-133 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT5G58140 169 / 2e-46 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 107 / 9e-25 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT1G68050 66 / 3e-11 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 63 / 1e-10 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 62 / 3e-10 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037216 [exp] 672 / 0 AT2G02710 425 / 2e-148 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10036144 [exp] 110 / 1e-25 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10018122 [exp] 109 / 2e-25 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10026572 [exp] 107 / 7e-25 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 106 / 2e-24 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 82 / 3e-16 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10013856 [exp] 77 / 5e-15 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10030757 [exp] 69 / 2e-12 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 66 / 2e-11 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053500 [exp] 457 / 1e-160 AT2G02710 431 / 2e-150 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.008G180700 [exp] 444 / 3e-155 AT2G02710 427 / 5e-149 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.001G342000 [exp] 109 / 1e-25 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 108 / 3e-25 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 104 / 7e-24 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.008G135200 [exp] 67 / 8e-12 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.018G090800 [exp] 67 / 9e-12 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 62 / 2e-10 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G105700 [exp] 58 / 9e-09 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08447 [flax] [poplar] PAS_3 PAS fold
Representative CDS sequence Show only first row Show all	>Lus10036711 pacid=23171240 polypeptide=Lus10036711 locus=Lus10036711.g ID=Lus10036711.BGIv1.0 annot-version=v1.0 ATGGGATTGGCGCTAATCGACCAACCGAGGATTGTCGATCCAACTTTTAAGGAAAGCTTCAGTCTTTTCATGGAATCGCAGCTAGGATTATTGATCGGAA ACTCCTTCGATAGCAGGTACTCCAGCTGGGCACGCGAGGTGCTCGACGAATTGCCCGACAGCTTCACCATTACCGACCCTTACATATCGGGCCACCCGAT CGTGTTCGCTAGCCGGCGGTTCCTCGAGATGTCCGGTTACTCGCTCGACGAAGTCTTGGGGAAGAACGGGAGGGTGTTCCAAGGTCCCAACACTTGCAGG AGATCGGTGATGGAGATTCGTGAAGCAATTCGTGGAGAGCGCGGTGTTGAGGTGAATCTGCTGAACTACCGGAGAGACGGGACGCCGATTTGGATGCTGT TCCAGATGACGCCGGTGTTTTGCAAGGAGGAAGGCAAGGTTGTTCATTTCGTCGCCGTTCAGGTTCCCATCCTCCGGAAGAGGAGGAATGGGGAGAGGCT TTGTGAGGAGGTTTTGTCTAGTTCTTGTAGAAGGGAAGTCTGCTCCAATTCTGATGTTGAATTGGGTGGAGTTTCAGCATCGGAGTCTGATTGTAGAGGT TTGTGCAAGTTCTTATTGGACACTAGTGTGCTTCCCAAACTGGGAAATGTTGGGATTGAAGAGCAATGCGAGGCAAGTGACAGAGAGAAGCAAATAGCTG CTACTGCTATCGGGAACGTGTTGTCAGTGCTAACGCATTACAGTGTGTCCACGGGGAAATTGGTGTGCGAACAGAGATTCGGGGCAAGCCTCGTCAGTTC ATCTTTACATATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTGATGGATCCATGCTTACCGGATATGCCTATTGTTTATGCTAGTGATGCCTTCTTA AGATTGACAGGGTATGCTAGAGATGAGGTTTTAGGGCACAGTTGTAGCTTCTTGAACGGTGTCGATACAGATTCCTCAGTACTGGATCAGGTGTCTCAGT GTCTGTTCTCTTATTTTATTGGGAAAGACAATAGCTCGTTTTGGAATCTTCTTCACGTGTCGCCAGTCCGTAATGCCAAAGGCAAGATTGCATACTTTGT GGGTGTCCAGATAGAAGAAGGCAGTGAGGACAGACACGGATTTAGCCCCGAGATGAGGCAGCTTAGCGTCATTGGGTCAATCAAGGTGGCCGTAAGGAGT TCGTCAATGTGCTCTACCTCCTCCAAATCATGGTAG
AA sequence Show only first row Show all	>Lus10036711 pacid=23171240 polypeptide=Lus10036711 locus=Lus10036711.g ID=Lus10036711.BGIv1.0 annot-version=v1.0 MGLALIDQPRIVDPTFKESFSLFMESQLGLLIGNSFDSRYSSWAREVLDELPDSFTITDPYISGHPIVFASRRFLEMSGYSLDEVLGKNGRVFQGPNTCR RSVMEIREAIRGERGVEVNLLNYRRDGTPIWMLFQMTPVFCKEEGKVVHFVAVQVPILRKRRNGERLCEEVLSSSCRREVCSNSDVELGGVSASESDCRG LCKFLLDTSVLPKLGNVGIEEQCEASDREKQIAATAIGNVLSVLTHYSVSTGKLVCEQRFGASLVSSSLHISLGRIKQSFVLMDPCLPDMPIVYASDAFL RLTGYARDEVLGHSCSFLNGVDTDSSVLDQVSQCLFSYFIGKDNSSFWNLLHVSPVRNAKGKIAYFVGVQIEEGSEDRHGFSPEMRQLSVIGSIKVAVRS SSMCSTSSKSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	0	1
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	1.4	0.8716
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	1.7	0.8568
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10015722 [exp]	3.7	0.8281
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10037216 [exp]	4.0	0.8505
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005368 [exp]	6.3	0.7791
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	8.1	0.8621
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	8.7	0.8085
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	11.0	0.8280
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	11.2	0.8325
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	12.0	0.7731

Compare expression of checked genes

Lus10036711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.