Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17900 745 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037215 [exp] 1483 / 0 AT3G17900 825 / 0.0 unknown protein Lus10013273 [exp] 1018 / 0 AT3G17900 696 / 0.0 unknown protein Lus10030797 [exp] 992 / 0 AT3G17900 731 / 0.0 unknown protein Lus10001450 [exp] 57 / 5e-08 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10012259 [exp] 44 / 5e-05 ND / Lus10030094 [exp] 43 / 0.0004 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033900 [exp] 717 / 0 AT3G17900 843 / 0.0 unknown protein Potri.008G194566 [exp] 253 / 3e-75 AT3G17900 229 / 6e-69 unknown protein Potri.008G194632 [exp] 208 / 2e-61 AT3G17900 195 / 5e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036712 pacid=23171141 polypeptide=Lus10036712 locus=Lus10036712.g ID=Lus10036712.BGIv1.0 annot-version=v1.0 ATGGAACCGAAAACAAGTAGTCAGATTCTCCAATACCTCTCGTCACTACCCTTCACAGCGCGGGCACCGGTGAGCGAATCGAGAGAGAACGACATTAGCA TTGCCCTTGATGTCCACCTGTCAAATACCTGTAGGAAATACGTACCAAGCACAAACATCACAAACATCCACGAGCTTCAAGACATAGAGGTCAATGAGGT CTCAAATTGGTCTGGTGGGAGGATGAATTTTCTGATACGGTCACCTAGTCGCCATGTAACACCTGAGAAGGTTCCTCCTCCTGCTCATGAACCTGTTATG GACACACAGTACATGGCAAAACCTACCAAGACTTTGGAAGGTCTTCTAACTGAGGATCCATTTCCCGAGTCTCCGATTGCTGGAGTTCGCCAAGGAGGGA CTGATAAATTTGAAGCTGAGAGTGGCAGTGATGATGTTAGTTCGGATGTGGGGAGAGATTCGTATGTTGTTGAGGGGCACTCGGATGTTTCTGAAGAAGA AGGATGGATCACCATTCCACATAAGGAACTTCCTGATGATTGGACTTCTTTGCCAAATATAGAGTCACTACGTGCTATGGACAGATCATTTGTCTTTCCT GGTGAACAAGTTCATATACTAGCCTGTGTATCAGCATCTAATCAAGATACAGAAACCATTACTCCGTTCAAAGTCGCTGCCCTAATGTCTAAAAGTGGCG TGGGACAAAGCCCCGAGAGACAACATGGAAATGGAAAGGACAGAGTACTTGACGATGGAGAAATGAGTTCGGGTGGTCAAGTTACGGGCCAAGAAGGGAA CAACTCGGTGGAACAAAGGAGTGATCCAAAGGATGATGTTTCTGCTGGTGAATCCTTTCTTAGAATGGAGGATCACAAACGGCAAACTGAAACCTTGTTA CAAAGATTCAAGAACTCCCATTTTTTTGTTCGGATTGCAGAGTCAGATGAGCCACTCTGGTCGAAGAAAGCTGGCCAAAACCGTCTGTTGGCTGACATGG ATGATCAGATCTCCTTTGGAAGTGGAACTGGAAAGGTCAAACCTCATCTCAATGCTCTCATAGATAAAGGAAATTTTGACGCCAATGTTGCCGGTGGAGC TGCCAGGAACAGTGTTAACTGTTGGTCTCTTTCCAATGGAGATGTAGTGGTGCTTCTACAAGTTAATGTTGGCACTCATATTCTTAGAGATCCTGTGATT GAGATTCTTCAGTTCGAGAAACAGATCAGAAATCTATCTCCCCATCAACCAGGTAGTCTGGTTTTTGCTCATCCTGACCCATATGGACAACTGCTAAAAT GGTTGCTTCCGTTGGATAATGCTTTATCTCCGCCACCACGTGCTTTATCGCCACCCAAAAGAACTCCTATCCCAGTCACTCCTCCCACAACTCAGAAGCC TGTGCCTTCCGGTTCACAGCTGTTCTCTAGTTTTAGAAGTTACTCTATGTCTTCACTGCCGCAGAACAGTACTCCGCCTACTCAACCAATTAAAGTCCAA AGCTCTAAACCCAATTTTGACATTGACGCTTTGGGAGAGTACTCATCTCAGAAGTTGAGGAGAGATCGTCAAAATGGTGGTGATGGAATTCTCTCTTTCC GAGGTGTCTCATTGGAGCAAGAAAGATTTTCAGTACGGTGTGGACTCGAAGGCATGTACATTCCTGGAAAAAGATGGAGGAAGAAGCTTGAAATCATTCA ACCTGTAGAGATTCGTTCCTTTGCTGCTGATTGTAACACAGATGACTTGATTTGTGTTCAGATAAAGAACATTTCTCCAACACACCTTTCTGACATAGTG GTGTACATAGATGCTATAACAATGGTTTTTAACGAGGCTCCAAAAGGTGGCCTACCTCTGTCCTTGCCAATAGCATGCATTGAAGCTGGAGATGATCATT GTTTACCAAATCTTGTCCTCAGGTGCTTGCCCACTCTAGGTATCTCTAAGTCTTTCTCGAGTCTATATCTGCTCACCACTTATGATTATATCGTCAAACC TGGCAGGAGAGGCGAGGAGCACTCTTTTATCCTCAAACCAGCATCATCAATGTGGAAGAGTCCCAAGGTTCACGGGAAAAGTACTTCGTTTTCATCAGCT TTACATTCTTCACATCATGCTGTTGAAAGGGGAAGTGGTAATTCAAATCCTGATATATACGCTATTATGGTATCTTGTCGCTGCAACTACACAGAGTCAA GACTGTTTTTCAAGCAGCCAACTGATTGGCGACCACGTTTCTCAAGGGACCTTCTGATTTCTGTCGCGCCCGAACTGTCACACTGGTCTTCTCCCTACGA GAGAGTCTCCCATCTTCCAGTTCAGAATTGGTCTGGTGGGAGGATGAATTTTCTGATACGGTCACCTAGTCGCCATGTAACACCTGAGAAGGTTCCTCCT CCTGCTCATGAACCTGTTATGGACACACAGTACATGGCAAAACCTACCAAGACTTTGGAAGGTCTTCTAACTGAGGATCCATTTCCCGAGTCTCCGATTG CTGGAGTTCGCCAAGGAGGGACTGATAAATTTGAAGCTGAGAGTGGCAGTGATGATGTTAGTTCGGATGTGGGGAGAGATTCGTATGTTGTTGAGGGGCA CTCGGATGTTTCTGAAGAAGAAGGATGGATCACCATTCCACATAAGGAACTTCCTGATGATTGGACTTCTTTGCCAAATATAGAGTCACTACGTGCTATG GACAGATCATTTGTCTTTCCTGGTGAACAAGTTCATATACTAGCCTGTGTATCAGCATCTAATCAAGATACAGAAACCATTACTCCATTCAAAGTCGCTG CCCTAATGTCTAAAAGTGGTGTGGGACAAAGCCCCGAGAGACAAAATGGAAATGGAAAGGACAGAGAACCTGATGATGGAGAAATGAGTTCGGGTGGTCA AGTTACGGGCCAAGAAGGGAACAACTCGGTGGAACAAAGGAGTGATCCAAAGGATGATGTTTCTGCTGGTGAATCCTTTCTTAGAATGGAGGATCACAAA CGGCAAACTGAAACCTTGTTACAAAGATTCAAGAACTCCCATTTTTTTGTTCGGATTGCAGAGTCAGATGAGCCACTCTGGTCGAAGAAAGCTGGCCAAA ACCGTCTGTTGGCTGACATGGATGATCAGATCTCCTTTGGAAGTGGAACTGGAAAGGTCAAACCTCATCTCAATGCTCTCATAGATAAAGGAAATTTTGA CGCCAATGTTGCCGGTGGAGCTGCCAGGAACAGTGTTAACTGTTGGTCTCTTTCCAATGGAGATGTAGTGGTGCTTCTACAAGTTAATGTTGGCACTCAT ATTCTTAGAGATCCTGTGATTGAGATTCTTCAGTTCGAGAAACAGATCAGAAATCTATCTCCCCATCAACCAGGTAGTCTGGTTTTTGCTCATCCTGACC CATATGGACTACTGCTAAAATGGTTGCTTCCTTTGGATAACGCTTTATCTCCGCCACCTCGTGCTTTATCCCCACCCAAAAGAGCTCCTATCCCAGTCAC TCCTCCCACATCTCAGAAGCCTGTGCCTTCCGGTTCGCAGCTGTTCTCTAGTTTTAGAAGTTACTCTATGTCTTCACTGCCGCAGAACAGTACTCCGCCT ACTCAACCAATTAAAGTCCAAAGCTCTAAACCCAATTTTGACATTGACGCTTTGGGAGAGTACTCATCTCAGAAGTTGAGGAGAGATCGTCAAAATGGTG GTGATGGAATTCTCTCTTTCCGAGGTGTCTCATTGGAGCAAGAAAGATTTTCAGTACGGTGTGGACTCGAAGGCATGTACATTCCTGGAAAAAGATGGAG GAAGAAGCTTGAAATCATTCAACCTGTAGAGATTCGTTCCTTTGCTGCTGATTGTAACACAGATGACTTGATTTGTGTTCAGATAAAGAACATTTCTCCA ACACACCTTTCTGACATAGTGGTGTACATAGATGCTATAACAATGGTTTTTAACGAGGCTCCAAAAGGTGGCCTACCTCTGTCCTTGCCAATAGCATGCA TTGAAGCTGGAGATGATCATTGTTTACCAAATCTTGTCCTCAGGAGAGGCGAGGAGCACTCTTTTATCCTCAAACCAGCATCATCAATGTGGAAGAGTCC CAAGGTTCACGGGAAAAGTACTTCGTTTTCATCAGCTTTACATTCTTCACATCATGCTGTTGAAAGGGGAAGTGGTAATTCAAATCCTGATATATACGCT ATTATGGTATCTTGTCGCTGCAACTACACAGAGTCAAGACTGTTTTTCAAGCAGCCAACTGATTGGCGACCACGTTTCTCAAGGGACCTTCTGATTTCTG TCGCGCCCGAACTGTCACACTGGTCTTCTCCCTACGAGAGAGTCTCCCATCTTCCAGTTCAGGTCTTAACTCTTAGAGCCTCCAATTTAACAGCCGAAGA TCTCACTCTTACAGTTCTTGCTCCGGCCTCTTTCACCGCTCCTCCTTCAGTTGGGTCGTTGATTTCGAGACCATCAACTCCAATGTCTGCACAAATTCGT CCGTCTGGGCCCGCAAGACAACACCTCGGGAGCAAAATGCACAGTCGGGTGGCTTCTGCACCTCCTTTTCTCGAACAACTGAACGAGGGAGGTCTATCTA CTTCCCTCGATGGCCAGTCCAACACCATACCTGATGTCATCTCAAGTACTGATCTCGGTTGCACTCATCTATGGCTACAAAGTAGAGTTCCACTAGGATG CGTCCCTGCAAATTCAACAGCCACGATAAAGCTCGAGCTACTTCCCTTGACCGACGGCATCATCACACTAGACACCTTGCAGATAGATGTCAAAGAGAAA GGTCTAACGTACATCCCCGAGTACTCCCTCAAGATAAATGCTACGTCTAGCATTTCTGCTGTTATAGTGTAG
AA sequence Show only first row Show all	>Lus10036712 pacid=23171141 polypeptide=Lus10036712 locus=Lus10036712.g ID=Lus10036712.BGIv1.0 annot-version=v1.0 MEPKTSSQILQYLSSLPFTARAPVSESRENDISIALDVHLSNTCRKYVPSTNITNIHELQDIEVNEVSNWSGGRMNFLIRSPSRHVTPEKVPPPAHEPVM DTQYMAKPTKTLEGLLTEDPFPESPIAGVRQGGTDKFEAESGSDDVSSDVGRDSYVVEGHSDVSEEEGWITIPHKELPDDWTSLPNIESLRAMDRSFVFP GEQVHILACVSASNQDTETITPFKVAALMSKSGVGQSPERQHGNGKDRVLDDGEMSSGGQVTGQEGNNSVEQRSDPKDDVSAGESFLRMEDHKRQTETLL QRFKNSHFFVRIAESDEPLWSKKAGQNRLLADMDDQISFGSGTGKVKPHLNALIDKGNFDANVAGGAARNSVNCWSLSNGDVVVLLQVNVGTHILRDPVI EILQFEKQIRNLSPHQPGSLVFAHPDPYGQLLKWLLPLDNALSPPPRALSPPKRTPIPVTPPTTQKPVPSGSQLFSSFRSYSMSSLPQNSTPPTQPIKVQ SSKPNFDIDALGEYSSQKLRRDRQNGGDGILSFRGVSLEQERFSVRCGLEGMYIPGKRWRKKLEIIQPVEIRSFAADCNTDDLICVQIKNISPTHLSDIV VYIDAITMVFNEAPKGGLPLSLPIACIEAGDDHCLPNLVLRCLPTLGISKSFSSLYLLTTYDYIVKPGRRGEEHSFILKPASSMWKSPKVHGKSTSFSSA LHSSHHAVERGSGNSNPDIYAIMVSCRCNYTESRLFFKQPTDWRPRFSRDLLISVAPELSHWSSPYERVSHLPVQNWSGGRMNFLIRSPSRHVTPEKVPP PAHEPVMDTQYMAKPTKTLEGLLTEDPFPESPIAGVRQGGTDKFEAESGSDDVSSDVGRDSYVVEGHSDVSEEEGWITIPHKELPDDWTSLPNIESLRAM DRSFVFPGEQVHILACVSASNQDTETITPFKVAALMSKSGVGQSPERQNGNGKDREPDDGEMSSGGQVTGQEGNNSVEQRSDPKDDVSAGESFLRMEDHK RQTETLLQRFKNSHFFVRIAESDEPLWSKKAGQNRLLADMDDQISFGSGTGKVKPHLNALIDKGNFDANVAGGAARNSVNCWSLSNGDVVVLLQVNVGTH ILRDPVIEILQFEKQIRNLSPHQPGSLVFAHPDPYGLLLKWLLPLDNALSPPPRALSPPKRAPIPVTPPTSQKPVPSGSQLFSSFRSYSMSSLPQNSTPP TQPIKVQSSKPNFDIDALGEYSSQKLRRDRQNGGDGILSFRGVSLEQERFSVRCGLEGMYIPGKRWRKKLEIIQPVEIRSFAADCNTDDLICVQIKNISP THLSDIVVYIDAITMVFNEAPKGGLPLSLPIACIEAGDDHCLPNLVLRRGEEHSFILKPASSMWKSPKVHGKSTSFSSALHSSHHAVERGSGNSNPDIYA IMVSCRCNYTESRLFFKQPTDWRPRFSRDLLISVAPELSHWSSPYERVSHLPVQVLTLRASNLTAEDLTLTVLAPASFTAPPSVGSLISRPSTPMSAQIR PSGPARQHLGSKMHSRVASAPPFLEQLNEGGLSTSLDGQSNTIPDVISSTDLGCTHLWLQSRVPLGCVPANSTATIKLELLPLTDGIITLDTLQIDVKEK GLTYIPEYSLKINATSSISAVIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17900			unknown protein		Lus10036712 [exp]	0	1
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	2.2	0.8875
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	2.8	0.8744
AT5G42940			RING/U-box superfamily protein...		Lus10010372 [exp]	5.8	0.8260
AT1G72390			unknown protein		Lus10013169 [exp]	6.0	0.8732
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	7.7	0.8514
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	11.3	0.8708
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10007993 [exp]	12.4	0.8572
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	12.7	0.8352
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10043204 [exp]	13.0	0.8388
AT1G13940			Plant protein of unknown funct...		Lus10026640 [exp]	14.8	0.7826

Compare expression of checked genes

Lus10036712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.