Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20050 291 / 5e-97 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 124 / 3e-33 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 108 / 2e-27 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 106 / 8e-27 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 87 / 7e-20 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 85 / 3e-19 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 76 / 4e-16 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 72 / 7e-15 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 70 / 5e-14 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032467 [exp] 313 / 2e-105 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10037214 [exp] 310 / 4e-104 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 306 / 1e-102 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10026773 [exp] 125 / 2e-33 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008406 [exp] 125 / 2e-33 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10014511 [exp] 108 / 1e-27 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 108 / 2e-27 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10028007 [exp] 107 / 2e-27 AT5G20890 752 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 107 / 4e-27 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058500 [exp] 295 / 2e-98 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.002G142700 [exp] 286 / 5e-95 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 125 / 9e-34 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G195300 [exp] 125 / 2e-33 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G341100 [exp] 112 / 5e-29 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 112 / 8e-29 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 102 / 1e-25 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 102 / 3e-25 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 90 / 4e-21 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 90 / 5e-21 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10036714 pacid=23171272 polypeptide=Lus10036714 locus=Lus10036714.g ID=Lus10036714.BGIv1.0 annot-version=v1.0 ATGCTGGTGGATGATATTGGTGACGTGACCATTACTAATGATGGTGCAACAATTCTTAAGATGCTAGAGGTGGAGCATCCTGCTGCCAAGGTGCTTGTGG AATTGGCTCAACTCCAAGACAAAGAAGTTGGAGATGGAACAACTTCAGTTGTAATAGTAGCAGCAGAGTTGCTGAAGAGAGCTAATGATTTGGTGAAGGA CAAGATCCATCCATCATCACTAGCTGGCAATGAGAGAAAACTGGCTGTGAAGGTTGAAAAACTTGGAAAGGATTCCCTGGTAAACTGTGCTAAGACCAGT ATGTCTTCAAAACTGATAGCCGGCGACAGCGACTTCTTTGCTAATTTGGTTGTTGATGCTGTACTATCAGTGAAGATGACAAATGTACGAGGTGAAATCG AATACCCAATCAAGTCAACAGGGCTTGGTGCTCAGTGGTTCTGTTTGTTGGTATTGGGTGTTAATATTCTAAAAGCTCATGGTAAAAGTGCAAGAGATAG TTACCTGTTGATTCGGTATGCCCTAAATACTGGCCGTGCTGCTCAAGGAATGCCAACAAAAGTCGCACCTGCTACAAGTGGTTGTCACTGA
AA sequence Show only first row Show all	>Lus10036714 pacid=23171272 polypeptide=Lus10036714 locus=Lus10036714.g ID=Lus10036714.BGIv1.0 annot-version=v1.0 MLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAQLQDKEVGDGTTSVVIVAAELLKRANDLVKDKIHPSSLAGNERKLAVKVEKLGKDSLVNCAKTS MSSKLIAGDSDFFANLVVDAVLSVKMTNVRGEIEYPIKSTGLGAQWFCLLVLGVNILKAHGKSARDSYLLIRYALNTGRAAQGMPTKVAPATSGCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036714 [exp]	0	1
					Lus10036765 [exp]	9.7	0.8118
AT2G06090			Plant self-incompatibility pro...		Lus10023196 [exp]	11.1	0.7200
AT2G16190			unknown protein		Lus10011284 [exp]	13.7	0.8118
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	16.8	0.8118
					Lus10006395 [exp]	19.4	0.8118
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	21.7	0.8118
AT3G26740		CCL	CCR-like (.1)		Lus10041522 [exp]	22.0	0.7976
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	25.6	0.8018
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	27.0	0.7956
AT2G29040			Exostosin family protein (.1)		Lus10004967 [exp]	34.1	0.6172

Compare expression of checked genes

Lus10036714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.