Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69840 500 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT5G62740 475 / 2e-171 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 424 / 4e-151 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 323 / 4e-111 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 50 / 7e-07 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 45 / 3e-05 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037213 [exp] 546 / 0 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10033099 [exp] 484 / 8e-175 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004268 [exp] 475 / 2e-171 AT5G62740 535 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 460 / 3e-165 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 456 / 7e-164 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 302 / 5e-103 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 302 / 6e-103 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10032909 [exp] 49 / 2e-06 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078000 [exp] 484 / 5e-175 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 472 / 4e-170 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G070500 [exp] 465 / 2e-167 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 317 / 7e-109 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 308 / 1e-105 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 283 / 2e-96 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 50 / 1e-06 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 49 / 2e-06 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 48 / 4e-06 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10036715 pacid=23171219 polypeptide=Lus10036715 locus=Lus10036715.g ID=Lus10036715.BGIv1.0 annot-version=v1.0 ATGGGTCAAGCTCTGGGTTGCGTCCAAGTGGATCAATCAAAAGTAGCTATCAAGGAAACTTTCGGGAAGTTCGACGAAGTGCTTCAGCCTGGCTGCCATT GTCTCCCGTGGTGCTTGGGAAGCAGTGTCGCTGGCCATCTCTCTTTGCGAGTTCAACAGCTTGATGTCAGCTGCGAGACCAAGACAAAGGATAATGTGTT TGTAACCGTTGTGGCATCTGTTCAATATCGAGCTCTCGCCGAGAAAGCATCCGATGCTTTCTACAAGCTGAGTAACACTAGAGGCCAGATCCAGTCATAT GTGTTTGATGTCATCAGAGCAAGTCTCCCCAAGCTGAACCTGGATGCTGCATTTGAACAGAAGAATGACATAGCCAAAGCAGTAGAGCAGGAACTCGAAA AGGCCATGTCGCATTATGGCTACGAGATAGTCCAGACCCTGATTGTTGATATCGAACCTGATGTACACGTCAAGAGGGCCATGAACGAGATCAATGCAGC TTCCAGAATGAGGGAAGCAGCAAACGAGAGGGCCGAGGCGGAGAAGATACTCCAGATAAAACGAGCTGAAGCCGAAGCAGAATCCAAGTACCTAGCTGGT GTTGGCATTGCGAGGCAGCGTCAGGCCATCGTGGATGGTCTAAGAGACAGCGTGCTGGCATTCTCCTCGAATGTACCGGGGACTAGTTCCAAGGATGTGA TGGACATGGTCCTTGTCACCCAGTATTTCGACACGATGAAGGAGATTGGTGCGTCTTCCAAGAGCAGCTCCGTGTTCATTCCGCATGGCCCTGGTGCTGT GAAGGACATTGCTTCTCAGATTAGGGAAGGTCTTCTTCAGGCCAATTCAACAGAGTAA
AA sequence Show only first row Show all	>Lus10036715 pacid=23171219 polypeptide=Lus10036715 locus=Lus10036715.g ID=Lus10036715.BGIv1.0 annot-version=v1.0 MGQALGCVQVDQSKVAIKETFGKFDEVLQPGCHCLPWCLGSSVAGHLSLRVQQLDVSCETKTKDNVFVTVVASVQYRALAEKASDAFYKLSNTRGQIQSY VFDVIRASLPKLNLDAAFEQKNDIAKAVEQELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAANERAEAEKILQIKRAEAEAESKYLAG VGIARQRQAIVDGLRDSVLAFSSNVPGTSSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIASQIREGLLQANSTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	0	1
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	1.4	0.9309
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	3.9	0.9120
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10003713 [exp]	4.0	0.8739
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	4.2	0.9138
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	4.2	0.8844
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	6.6	0.9027
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	8.2	0.8634
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	9.5	0.8781
					Lus10025204 [exp]	9.7	0.8932
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	10.2	0.8929

Compare expression of checked genes

Lus10036715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.