Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01280 265 / 6e-88 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G15090 231 / 1e-74 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G67500 172 / 1e-51 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G57490 168 / 5e-50 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 89 / 2e-20 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037212 [exp] 472 / 6e-169 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 315 / 1e-106 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10013271 [exp] 308 / 2e-104 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 260 / 7e-86 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 258 / 5e-85 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10019284 [exp] 163 / 5e-48 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 162 / 3e-47 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 139 / 8e-39 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 138 / 2e-38 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033500 [exp] 303 / 1e-102 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.008G194900 [exp] 301 / 7e-102 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.017G078200 [exp] 281 / 7e-94 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 172 / 1e-51 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.018G093900 [exp] 166 / 2e-49 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.007G055800 [exp] 166 / 3e-49 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.005G146800 [exp] 160 / 7e-47 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 159 / 9e-47 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.012G070300 [exp] 132 / 1e-36 AT3G01280 163 / 3e-49 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.001G294100 [exp] 107 / 2e-26 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10036716 pacid=23171033 polypeptide=Lus10036716 locus=Lus10036716.g ID=Lus10036716.BGIv1.0 annot-version=v1.0 ATGAAGGGCGACGGTGGTCCTGGGCTCTACAAAGATATCGTCGGGCTATCAAGAGGCAGGGCATTGATAGGATTCCTCATCCATCCTCATCCTCTTGTCT TTCGATTTCGTCGTGGTCGATCGGTGATCTTGATCGGTGTTTCTTTGTTCTTGTTTCGGTGCAGCGTTTCTTTACAGGGACTATGTGACGGACCACAAGT TCAGCATCACTACCTTCACCTCCAATGGAGCCTCTCACTACTTTCACCGCCAATGGAGTCGCATATTACTCGTCCTGGCTTCCGTTCTGTTTTTACTCTG GTTGCTATCACATCGAATGGATTTAAGAAAGGTGACCAGTTCTCAGGTGACGTGACCATCAATCAGCTGAGGAACAAGAACATCTTAACTGACTTGAAGG TGGACACAGATTCTAACCTTTTCGCTACCATCACTGTCGGTGATACTGCTCCTGGTTTGACTGCGGTCTTTAGCTTCACAGTGCCTGATCAGAGGTCTGG CAGGGTGGAACTCCAGTACAGGCATGAGTACACTGGGATAACCACTGACATTGGCATGACTGCAAATCCTCTTGTTAACTTCTCTGGTTTAGTTGGCACC AATATGTTTTCCGTGGGGACTGACGTCTGCTTTGACACTGCCACTGGCAAGTTCACCAAATTGAATGCTGGTTTCAATTACAACAATGGTGCTGGTGTGC TTAGTAGCGTAACACTGAATGACAAGGGAGATTCACTCGTGGCATCATACTGGCATTTCTTGGGTAAAAACATCGACACCTCCGTAGGAGCCGAGATGAC TCACAGCTTCTCTACCAACGAGAACACTCTGACCATCGGCACCCAGCATAGGCTCGACTGGCGTACCAATCTCCTGGGCAAAGTGGACACCTCCGGTAAA GTCAGTGCCGCCATCGAGCAAGAGTTTCACGGAGCGTCTCGCTTCACCATCTCCGGGGAGGTAGACACGAAGGCAATTGAAAAGAGTGCCAAGGTCGGAC TCGCACTCTGCCTGATTCCAAGAGTCTGA
AA sequence Show only first row Show all	>Lus10036716 pacid=23171033 polypeptide=Lus10036716 locus=Lus10036716.g ID=Lus10036716.BGIv1.0 annot-version=v1.0 MKGDGGPGLYKDIVGLSRGRALIGFLIHPHPLVFRFRRGRSVILIGVSLFLFRCSVSLQGLCDGPQVQHHYLHLQWSLSLLSPPMESHITRPGFRSVFTL VAITSNGFKKGDQFSGDVTINQLRNKNILTDLKVDTDSNLFATITVGDTAPGLTAVFSFTVPDQRSGRVELQYRHEYTGITTDIGMTANPLVNFSGLVGT NMFSVGTDVCFDTATGKFTKLNAGFNYNNGAGVLSSVTLNDKGDSLVASYWHFLGKNIDTSVGAEMTHSFSTNENTLTIGTQHRLDWRTNLLGKVDTSGK VSAAIEQEFHGASRFTISGEVDTKAIEKSAKVGLALCLIPRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10036716 [exp]	0	1
AT1G15860			Domain of unknown function (DU...		Lus10040019 [exp]	4.9	0.7638
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	10.4	0.7515
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	11.0	0.7258
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10004187 [exp]	12.5	0.6663
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10002734 [exp]	17.0	0.7638
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	21.0	0.7459
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	35.0	0.6547
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	51.2	0.6690
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	58.2	0.7291
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	69.4	0.6732

Compare expression of checked genes

Lus10036716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.