Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69830 1149 / 0 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 409 / 8e-135 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) AT4G25000 350 / 3e-112 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037211 [exp] 1712 / 0 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 1365 / 0 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10013270 [exp] 1358 / 0 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 415 / 5e-137 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10042655 [exp] 367 / 3e-118 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10021728 [exp] 366 / 3e-118 AT4G25000 563 / 0.0 alpha-amylase-like (.1) Lus10029118 [exp] 46 / 0.0002 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10013044 [exp] 45 / 0.0003 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092900 [exp] 1219 / 0 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1) Potri.017G093200 [exp] 518 / 1e-169 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 416 / 4e-137 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Potri.014G029400 [exp] 399 / 1e-130 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.002G126300 [exp] 387 / 2e-126 AT4G25000 591 / 0.0 alpha-amylase-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF07821 [flax] [poplar] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10036717 pacid=23171306 polypeptide=Lus10036717 locus=Lus10036717.g ID=Lus10036717.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGGTCACCGTCGAGCCGCTCCTCCGATGTCACCGCCGGATGGAGGCTTCTGGATTCCGGATGCTCACCTGCTCCTCCTCTTCTTCTTCTG CGGTTAATTGTCCGTGGCAGAAGCAGTTTTTCCGTGGCGCCAGTTTCAGGAAATGCAAGCTTCCAAGGGGTAGTGTCGTGATCAAAGCTAGCAGCACCGA TACGGTTGTTGCCGAGACCTCTGATGAATCGTCCGTGGATGCGTTTTTCCGGGAGAGCTTTCCCGTCACTCGAACTGAAACGGTTGAAGGGAAGATGTTT GTTCGCGCAGATCAGGAGAATGGGGAAGGCAATTGGCAGCTTACTGTAGGATGTAGCATACCTGGGAACTGGATTCTTCATTGGGGAGTTACTTACGTCG ATGATCTTGGCAGCGAATGGGATCAACCTCCAGAACATATGAGGCCATCTGGTTCAGTACCAGTGAAGGATTATGCAATAGAGACACCTTTACAGAAAGC ATCTGAAGATGATCCATTCTGTGAACTAAAGATTGATATTGACCCCAATTGTGCAATTTCTGCAATAAATTTTGTCCTCAAGGATGAAGAAACTGGAACC TGGTATCAGTATAAGGGGAGAGATTTTAAGGTGGTTCTTGGGGATAACCGCCTCGAAGGCGGCAATGGAACAATCAGCTCGAATTTTCCAGGGCCTTTCC TTTATAACCCATTGCTCAAAACAACAACACAAGATGGCATCGGTGAGCACAATGATGATAAGGGGGAGGATCAGAAGTTAGAAGGGTTCTATGAAGAGCA GACCATTATGAAACATATTGCTATTAAAAATTCAGTGTCCGTTTTAGTTAGAAGGTGCCCTGAGACATTCAGGAATCTTGTTCATCTTGAAACCGATCTA CCTGCAGTTGTTGTTCACTGGGGAGTATGCAGAGATGACGAGAAAAATTGGGAAATCCCACCTGGCCCTCATCCACCAGAAACGATCATATTCAAGGAAA AGGCCTTGCGGACTTCTTTGCAGTCTAAGGAGGATGGGGGTGGATGTTCAGGGTTGTTTACCTTGGATGGAGATCTTGCTGGTTTTCTTTTTGTTCTCAA GCTAAATGATAGCACTTGGTTGAAATGCATGGGAAACGACTTCTACGTCCCTCTCTCAAGTTCAAGCAGCTTGCTTGCTCAACCTGGACAGGAACAATCT AAAGATGCACCAGCCTCCGAAAGGGGAGTAGGTGCAAATCAAGGTTCTGGTACTGCTTTTACTGATGAGATAATTAAAGAAATAAGGCACTTGGTGAGTG GAATCTCTGCAGAGAGCAGCCAGAAGGTGAAAACGAAAGAAGCACAAGAGAACATTCTTCAGGAGATTGAGAAGTTGGCTGCTGAAGCTTACAGTATCTT CCGAAGCTCCAAACCGACTTTCAAAGAAGAAGCTGTTTTGGAAGAAGAACTGAAGAAAAAAACCCCTCCGCTAAAGTTCTCTGGTACAGGCAGTGGATAT GAAATTTTGCTTCAAGGATTCAATTGGGAATCTCATAAATCTGGAAGATGGTATATGGAGTTTAAAGACAAGGCCAAAGATATAGCTTCACTTGGGTTCA CTGTAGTATGGTTGCCTCCACCTACAGATTCAGTGTCACCTGAAGGATACATGCCTAGGGATCTGTATAACTTGAACTCCAGATATGGAAATATTGATCA GCTAAAGGATCTTGTGGGAACACTTCATAAATCAGACATTAAAGTTCTTGGAGATGCTGTCCTGAACCACCGATGTGCACAGTACCAAAACCAGAATGGA ATTTGGAACATGTTTGGTGGTCGCTTAAATTGGGATGACCGAGCTGTCGTTGCTGATGATCCACATTTCCAGGGTAGAGGAAACAAGAGCAGTGGGGACA ACTTTCACGCTGCCCCAAACATCGATCATTCGCAGGATTTCGTGAGGAAAGATTTGAAAGAATGGATGTGCTGGCTAAGAGAAGAAATTGGCTATGATGG TTGGCGGCTTGATTTCGTTAGAGGGTTTTGGGGCGGCTATGTAAAGGATTACATGGACGCAACCAGCCCTGATTTTGCAGTTGGAGAGTATTGGGATTCC CTAAGTTATTCTTACGGGGAAATGGATCACAATCAAGATGCACACAGGCAAAGAATTATTGATTGGATCAATGCAACAAGTGGAACTGCTGGTGCATTTG ACGTCACCACGAAAGGGATTCTTCATGCTGCACTCGAAAGGTGCGAGTATTGGCGTTTATCAGATTCCAAAGGAAAGCCTCCAGGAGTTGTCGGATGGTG GCCTTCTCGTGCTGTTACTTTCGTAGAGAATCACGACACTGGCTCAACCCAGGGCCATTGGAGATTTCCAGGTGGGAAAGAAATGCAAGGATATGCGTAC ATCCTGACCCATCCAGGAACGCCAGCAGTATTCTTTGACCACGTCTTCTACTCCGATTATCGCTCCGAGATCGCAGCTCTCCTCGCTTTCAGAAACCGCC AAAAAATACATTGCCGTAGCATAGTGAAAATTGCAAAGGCGGAAAGGGACGTGTATGCAGCCATAATCGATGACAAAGTAGCAGTGAAGATCGGACCAGG CCACTTCGAACCCCAGAATGGTAACTGGAAATCGGCTCTCGAGGGGAGGGATTACAAGCTCTGGGAGTTATCCTCTTGA
AA sequence Show only first row Show all	>Lus10036717 pacid=23171306 polypeptide=Lus10036717 locus=Lus10036717.g ID=Lus10036717.BGIv1.0 annot-version=v1.0 MSSSVTVEPLLRCHRRMEASGFRMLTCSSSSSSAVNCPWQKQFFRGASFRKCKLPRGSVVIKASSTDTVVAETSDESSVDAFFRESFPVTRTETVEGKMF VRADQENGEGNWQLTVGCSIPGNWILHWGVTYVDDLGSEWDQPPEHMRPSGSVPVKDYAIETPLQKASEDDPFCELKIDIDPNCAISAINFVLKDEETGT WYQYKGRDFKVVLGDNRLEGGNGTISSNFPGPFLYNPLLKTTTQDGIGEHNDDKGEDQKLEGFYEEQTIMKHIAIKNSVSVLVRRCPETFRNLVHLETDL PAVVVHWGVCRDDEKNWEIPPGPHPPETIIFKEKALRTSLQSKEDGGGCSGLFTLDGDLAGFLFVLKLNDSTWLKCMGNDFYVPLSSSSSLLAQPGQEQS KDAPASERGVGANQGSGTAFTDEIIKEIRHLVSGISAESSQKVKTKEAQENILQEIEKLAAEAYSIFRSSKPTFKEEAVLEEELKKKTPPLKFSGTGSGY EILLQGFNWESHKSGRWYMEFKDKAKDIASLGFTVVWLPPPTDSVSPEGYMPRDLYNLNSRYGNIDQLKDLVGTLHKSDIKVLGDAVLNHRCAQYQNQNG IWNMFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWMCWLREEIGYDGWRLDFVRGFWGGYVKDYMDATSPDFAVGEYWDS LSYSYGEMDHNQDAHRQRIIDWINATSGTAGAFDVTTKGILHAALERCEYWRLSDSKGKPPGVVGWWPSRAVTFVENHDTGSTQGHWRFPGGKEMQGYAY ILTHPGTPAVFFDHVFYSDYRSEIAALLAFRNRQKIHCRSIVKIAKAERDVYAAIIDDKVAVKIGPGHFEPQNGNWKSALEGRDYKLWELSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	1.0	0.9218
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	3.5	0.9026
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	3.7	0.8912
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	5.0	0.8946
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10038488 [exp]	6.3	0.8409
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	7.5	0.8832
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	9.2	0.8781
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	9.9	0.8814
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	11.4	0.8753
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	11.7	0.8936

Compare expression of checked genes

Lus10036717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.