Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27000 255 / 4e-84 Protein of unknown function (DUF1664) (.1) AT2G02730 228 / 8e-74 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G04960 184 / 2e-56 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 93 / 2e-21 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G24267 72 / 6e-14 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G44674 50 / 3e-08 Protein of unknown function (DUF1664) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037210 [exp] 563 / 0 AT1G27000 252 / 8e-82 Protein of unknown function (DUF1664) (.1) Lus10013269 [exp] 388 / 2e-136 AT1G27000 254 / 8e-84 Protein of unknown function (DUF1664) (.1) Lus10030793 [exp] 323 / 1e-101 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10014626 [exp] 179 / 8e-54 AT1G04960 318 / 3e-108 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10033807 [exp] 129 / 1e-35 AT1G04960 218 / 2e-70 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10011347 [exp] 98 / 5e-23 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10003127 [exp] 84 / 2e-18 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092700 [exp] 353 / 2e-122 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.008G149000 [exp] 347 / 6e-120 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1) Potri.002G219300 [exp] 184 / 4e-56 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.014G160800 [exp] 182 / 2e-55 AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.001G058700 [exp] 111 / 6e-28 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.003G169200 [exp] 105 / 5e-26 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10036718 pacid=23170984 polypeptide=Lus10036718 locus=Lus10036718.g ID=Lus10036718.BGIv1.0 annot-version=v1.0 ATGGCTATGCAAGCTGCGTTCAGCTCCAGGATCCTGTTAATCGCCGGAGCAGGTTATGCAGGGACGATATTGGTCCAGAAAGGTAAATTGTCCGATCTGA TCGGCGAACTTCAGGTAACCTCGAGTTGCTCAGCCTCGCCGTTTATGGCAATCGTGAAAGGAATAGAGAAGGGGGACACGGATGGCGATTCAGGTCATGC TGATGCTATTGCGCAGCAGGTGCGTAGATTGGCTCAGGAGGTTCGGCAGCTTGCTTCATCGAGGCAAATTACTGTTCTGAATGGAAATGGGGGATCAGGT AATTTAACCAGTCTTATAGTGCCGGCTGCTGCACTGGGAGCTGTAGGCTATGGTTACATGTGGTGGAAGGGTCTGAAACTTTCAGATCTTATGTATGTGA CAAAGCGAAATATGGCAGCTGCTGTTTCAAACTTAACAAAGCATCTGGAGGATGTTTCTGGGGCTCTAGCAAAAGCAAAGGAACATTTAACACAAAGGAT TCAGGGTTTAGACGATAAGATGGACGCTCAGAAGGAAATCTCCAAAGCAATTCAAAACGATGTTACTACTATTAACGAGAACATTCAGCTGCTTGACTCT GACCTGTGGGAACTGCAGCGCATTGTCTCTGGTTTGGACGGAAAGATAGGCTCATTGGAGAACAAGCAGGATCTAGCTAATATGGGTATTGCTTTCTTGT GCAACTTTGCTCATGGAAAGAAAGTAACAATGCCTAAAGTCCTGGAGGATCAGCTTACTGGTCCAGGGAGAACTCGCAGTTCACTTACATTCCATCAAGC TTCAGACGGCATGGGCCTGAAGGCGCTGACAGATAATTTAGCTCGTAGTGCAAGTGTTCCAGTGAATGATATCAATGGAGAAGAGCCACAGATGCCAGCG GCTGACAGACACGTACCTTTATTGAGGTAA
AA sequence Show only first row Show all	>Lus10036718 pacid=23170984 polypeptide=Lus10036718 locus=Lus10036718.g ID=Lus10036718.BGIv1.0 annot-version=v1.0 MAMQAAFSSRILLIAGAGYAGTILVQKGKLSDLIGELQVTSSCSASPFMAIVKGIEKGDTDGDSGHADAIAQQVRRLAQEVRQLASSRQITVLNGNGGSG NLTSLIVPAAALGAVGYGYMWWKGLKLSDLMYVTKRNMAAAVSNLTKHLEDVSGALAKAKEHLTQRIQGLDDKMDAQKEISKAIQNDVTTINENIQLLDS DLWELQRIVSGLDGKIGSLENKQDLANMGIAFLCNFAHGKKVTMPKVLEDQLTGPGRTRSSLTFHQASDGMGLKALTDNLARSASVPVNDINGEEPQMPA ADRHVPLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	0	1
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	3.5	0.8999
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	7.5	0.8791
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10042302 [exp]	11.8	0.8978
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	13.4	0.8749
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	17.2	0.8906
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10035184 [exp]	17.9	0.8788
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	20.2	0.8859
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	22.6	0.8950
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	23.0	0.8927
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	23.1	0.8165

Compare expression of checked genes

Lus10036718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.