Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 131 / 6e-38 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 129 / 6e-37 Aldolase-type TIM barrel family protein (.1.2.3) AT4G18360 122 / 2e-34 Aldolase-type TIM barrel family protein (.1.2) AT3G14150 108 / 5e-29 Aldolase-type TIM barrel family protein (.1.2) AT3G14130 107 / 1e-28 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023302 [exp] 144 / 1e-42 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10038507 [exp] 142 / 2e-41 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 134 / 2e-39 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013724 [exp] 122 / 8e-37 AT3G14420 170 / 2e-53 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10005590 [exp] 124 / 7e-35 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013725 [exp] 124 / 7e-35 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10013173 [exp] 107 / 3e-30 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 107 / 3e-28 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10013171 [exp] 104 / 3e-27 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065200 [exp] 131 / 9e-38 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.011G112700 [exp] 129 / 1e-36 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.001G394400 [exp] 126 / 1e-35 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069300 [exp] 114 / 6e-31 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069600 [exp] 111 / 5e-30 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 111 / 6e-30 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01070 [flax] [poplar] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10036720 pacid=23171049 polypeptide=Lus10036720 locus=Lus10036720.g ID=Lus10036720.BGIv1.0 annot-version=v1.0 ATGGAGCTGCAGGAATCATCGTGTCCAATCATGGAGGACGACAGTTTGATTCTGTGCCCGCCACCATCACAGTTCTCGAAGAGCCTCCGATATAACGATT TTAATTTTGAAGGTAGTGAAAGCTGCAGAAGGCAGAGAGCTCCAGTGTTCATGGATGGAGGAGTTCGTCGAGGGACCGACGTGTTCAAGGCACTGGCGTT GGGAGCTGCTGGTGTATTTTGGCAAAAAAAGCAGATAGGAAGGTCAGTGGTGTTCTCGTTGGCAGCAGATGGAGAAGGGGGAGTGAGGAAAGTGCTTCAG ATGCTGAGGGACGAGCTCGAATTGACCATGTCGTTGACCGGTTGCGCTTCGATCGACGACATTTCTCAAAACCATGTTGTTACCGGCTGGGGTCGGCCTG GTCCTCGCATCCTTCCCAGCACCAGGTTGTGA
AA sequence Show only first row Show all	>Lus10036720 pacid=23171049 polypeptide=Lus10036720 locus=Lus10036720.g ID=Lus10036720.BGIv1.0 annot-version=v1.0 MELQESSCPIMEDDSLILCPPPSQFSKSLRYNDFNFEGSESCRRQRAPVFMDGGVRRGTDVFKALALGAAGVFWQKKQIGRSVVFSLAADGEGGVRKVLQ MLRDELELTMSLTGCASIDDISQNHVVTGWGRPGPRILPSTRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14420			Aldolase-type TIM barrel famil...		Lus10036720 [exp]	0	1

Compare expression of checked genes

Lus10036720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.