Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01270 520 / 0 Pectate lyase family protein (.1) AT5G15110 516 / 0 Pectate lyase family protein (.1) AT1G14420 515 / 0 AT59 Pectate lyase family protein (.1) AT2G02720 484 / 8e-170 Pectate lyase family protein (.1) AT4G13710 448 / 2e-155 Pectin lyase-like superfamily protein (.1.2) AT3G07010 435 / 3e-151 Pectin lyase-like superfamily protein (.1) AT3G24230 430 / 2e-148 Pectate lyase family protein (.1) AT1G67750 427 / 5e-148 Pectate lyase family protein (.1) AT3G24670 422 / 1e-145 Pectin lyase-like superfamily protein (.1) AT1G04680 421 / 3e-145 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037207 [exp] 812 / 0 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 633 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 506 / 9e-179 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 496 / 2e-174 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 476 / 5e-166 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 472 / 6e-165 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10038157 [exp] 436 / 8e-151 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 432 / 2e-149 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 431 / 3e-149 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148800 [exp] 597 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 557 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.017G078400 [exp] 510 / 9e-180 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 494 / 1e-173 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 439 / 6e-152 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 438 / 9e-152 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 427 / 6e-148 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 426 / 8e-148 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 424 / 2e-146 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G238800 [exp] 421 / 3e-145 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase CL0268 [flax] [poplar] PF04431 [flax] [poplar] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Lus10036721 pacid=23171172 polypeptide=Lus10036721 locus=Lus10036721.g ID=Lus10036721.BGIv1.0 annot-version=v1.0 ATGGATTCCTTATGCATCAGGTTGAGTTTGGTTGTTCTAGTCGTGGTTTCGACTTTGGTTTATGATGTTGGCGCCCACATTGCTGATTTCGACGAGTATT GGCAGCAACGAGCCGAGGAAGCGAGACGGGCCGCCCTACAGACCTACCACCCGGAGCCGTACAATGTCACGGAGCATTTCAATGCAATGGTCCACATGGA TCTGTTCGGGTCGAATACCACCCGGCGGAGCATGAAGAAGAACTGGGGTCCGTGTATGGCTACCAATCCGATCGACCGGTGCTGGCGGTGCGACCCGAAC TGGGCCAAAAACCGCCAGAAGCTGGCGGACTGTGTGCAGGGGTTTGGGTATAAGACGAGAGGTGGGAAGGGAGGGCCGATCTACGTGGTCACTGACGGCT CAGACGACGATATGGTCAACCCGAAACCCGGGACGCTCCGACATGCGGTGATCCAGAAAGGTCCCCTCTGGATCATCTTCGGACGGAGCATGGTCATAAA ATTATGCCAGGAGCTCATGGTCACTTGTGACAAGACCATCGACGCGAGAGGAGCCAACGTCCACATAACTAAAGGAGCCGGGATCACGCTTCAGTACGTG CAGAACGTGATCATCCACGGGCTCCACATTCACGACATTGTCCCTGGTTCTGGTGGACTGATTCGGGACTCCGTGGATCACTATGGCTTCCGGTCTAGGA GCGATGGCGACGGGATCTCGCTCTACGGCGCATCCAACATATGGATCGACCACGTGTCCATGTCGAACTGCGGCGATGGGGTCATCGATGCCATCATGGG CACCACCGGCGTCACCATCTCTAACTCCCATTTCACCCATCATAACGAGGTGTTGTTGTTCGGAGCAAGCGCGAGCCACTCGAACGACACGATCATGCAG ATCACGATCGCGTTCACCCATTTCGGAAGGGGTCTGGTCCAGAGGATGCCAAGGTGTAGATGGGGATTCTTCCACGTGGTCAACAACGACTACACTCACT GGCTAATGTACGCCATCGGAGGTAGCAACAAGCCTACCATCATCAGCCAGGGCAACCGATTCATCGCTCCTGAGAACCATCATGCCAAACAAGTGACGAA GAGGGAATACGCATCGGAAGGAGACTGGAAGTCGTGGGATTGGGTAACAGAAGGAGATCTGTTGATGAACGGCGCATATTTCATCCCGTCGGGGAATCCA AGGGTTGCCAGCAAATATTCGAATAGACAACTTATCAAACAGAAACCTGGGACATTTGTTACCAGGATGGTTCGTTATGCCGGCACACTTGAATGCCGCG TTGGAAAGCCATGCTAA
AA sequence Show only first row Show all	>Lus10036721 pacid=23171172 polypeptide=Lus10036721 locus=Lus10036721.g ID=Lus10036721.BGIv1.0 annot-version=v1.0 MDSLCIRLSLVVLVVVSTLVYDVGAHIADFDEYWQQRAEEARRAALQTYHPEPYNVTEHFNAMVHMDLFGSNTTRRSMKKNWGPCMATNPIDRCWRCDPN WAKNRQKLADCVQGFGYKTRGGKGGPIYVVTDGSDDDMVNPKPGTLRHAVIQKGPLWIIFGRSMVIKLCQELMVTCDKTIDARGANVHITKGAGITLQYV QNVIIHGLHIHDIVPGSGGLIRDSVDHYGFRSRSDGDGISLYGASNIWIDHVSMSNCGDGVIDAIMGTTGVTISNSHFTHHNEVLLFGASASHSNDTIMQ ITIAFTHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSNKPTIISQGNRFIAPENHHAKQVTKREYASEGDWKSWDWVTEGDLLMNGAYFIPSGNP RVASKYSNRQLIKQKPGTFVTRMVRYAGTLECRVGKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01270			Pectate lyase family protein (...		Lus10036721 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	3.7	0.8151
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	5.2	0.7659
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10001619 [exp]	20.3	0.7290
AT5G16030			unknown protein		Lus10033537 [exp]	20.5	0.7980
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	26.8	0.7472
AT1G73020			unknown protein		Lus10000526 [exp]	29.7	0.7647
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	31.8	0.7248
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008403 [exp]	38.7	0.6824
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	49.7	0.7144
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	50.5	0.7230

Compare expression of checked genes

Lus10036721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.