Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20220 311 / 3e-104 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT5G52380 43 / 0.0001 VASCULAR-RELATED NAC-DOMAIN 6 (.1) AT5G51300 43 / 0.0004 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039230 [exp] 44 / 7e-05 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10027475 [exp] 44 / 9e-05 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10038932 [exp] 43 / 0.0003 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10010847 [exp] 41 / 0.0005 ND 40 / 6e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092600 [exp] 346 / 3e-117 AT5G20220 429 / 5e-149 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.012G141700 [exp] 52 / 1e-07 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.015G144600 [exp] 50 / 6e-07 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.005G234700 [exp] 47 / 7e-06 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.001G126400 [exp] 44 / 0.0002 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 44 / 0.0002 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.004G161800 [exp] 43 / 0.0002 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036722 pacid=23171120 polypeptide=Lus10036722 locus=Lus10036722.g ID=Lus10036722.BGIv1.0 annot-version=v1.0 ATGTCAGCGATTTACGGCTGCTTGGGGGCAGTGATTCCACAGTGGAAGCAGAAGAACACTCGTTTGTTCATTCTCCTTCCTTTAAAGAGGGATATCAGCC GTTCGATTCGCTGTTGCAGTAGCAATGATCCAATTTCCAAGTCGGGTTATGATTCTTCAGACGAATTGCTCGGACTAGCAGCTGATGCCGCCGACCCAAA ATTAAGGAGTGTTGAAAGAAAGCCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAGGGAGCTTCCTTGCCCTAGTTGCAGAGGGAGAGGCTATACT CCATGTTCCGAGTGTGGGATTGAACGATTTAATCTGGATTGCTCTCAATGTGGTGGTAAGGGTATAATGACTGGGCGGTTCTCAGGGGAGTGCGTAGTAT GGGAGGAGTCCATCGACGAGCAGCCATGGGAGAAAGCTCGATCAATTTCTGCTTTCAAAGTGAAGGAAGATGATGAGGTTGATAATTTAGACATAAAGTT GGAACCTAAGAAGAAATCCAGGCGTGTGTACCGATCGCCATCTCCTGAAGCCAAAGGAACCGCAGCTGCTAGGAAGCACGCTTCCGAAACTCTAAAGGCC TTCTTTAGCGACCCTGAAAATCGGCGCAAGAGAAGCATTGCCATGAAAGGCGTACGATTTTATTGCACGAACGGTGGGTGGGAAGGTCACAGGAAGCACT ACTGTCCTGAACTCAAGAACAGCCCATCCAATCAACAGTTTCGATGCAGGATATGCAGCGAAAAGGGGCATAACAGAAGAGCCTGTCCAAATTCGAGGAG CAATGCCAATCGCAAAGTCGAAGTTAGGACAGTGCAGCATTGCAGAATATGCGGCCAAACTGGCCATAACCAGTGGTCTTGCCCGCGAGCGACTGGATTA GCCTCCGGAAAGAATCGTAAACAGATGGCTAGAAGGAAGTATAGCTGCAGGATATGCAATCAAATCGGCCATAACAGCAGGAGCTGCCCCGATAGAAGAG CTGATCATCATTCAGTAACCGATTCACAGCCAGGATAG
AA sequence Show only first row Show all	>Lus10036722 pacid=23171120 polypeptide=Lus10036722 locus=Lus10036722.g ID=Lus10036722.BGIv1.0 annot-version=v1.0 MSAIYGCLGAVIPQWKQKNTRLFILLPLKRDISRSIRCCSSNDPISKSGYDSSDELLGLAADAADPKLRSVERKPRSWFGPNGQYIRELPCPSCRGRGYT PCSECGIERFNLDCSQCGGKGIMTGRFSGECVVWEESIDEQPWEKARSISAFKVKEDDEVDNLDIKLEPKKKSRRVYRSPSPEAKGTAAARKHASETLKA FFSDPENRRKRSIAMKGVRFYCTNGGWEGHRKHYCPELKNSPSNQQFRCRICSEKGHNRRACPNSRSNANRKVEVRTVQHCRICGQTGHNQWSCPRATGL ASGKNRKQMARRKYSCRICNQIGHNSRSCPDRRADHHSVTDSQPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	0	1
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	1.0	0.9507
					Lus10042279 [exp]	2.0	0.9112
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	3.7	0.8860
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	3.9	0.9005
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	4.9	0.8724
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	4.9	0.8866
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	6.0	0.8928
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	8.4	0.8927
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	8.9	0.8988
AT3G17930			unknown protein		Lus10042280 [exp]	10.4	0.8994

Compare expression of checked genes

Lus10036722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.