Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14410 325 / 4e-113 WHY1, ATWHY1, PTAC1 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) AT2G02740 322 / 1e-111 WHY3, ATWHY3, PTAC11 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) AT1G71260 173 / 1e-53 WHY2, ATWHY2 WHIRLY 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037206 [exp] 259 / 2e-85 AT1G14410 227 / 1e-72 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) Lus10017892 [exp] 168 / 2e-51 AT1G71260 271 / 3e-92 WHIRLY 2 (.1) Lus10035067 [exp] 167 / 7e-51 AT1G71260 270 / 1e-91 WHIRLY 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149100 [exp] 335 / 6e-117 AT2G02740 321 / 4e-111 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) Potri.010G092500 [exp] 213 / 8e-69 AT2G02740 208 / 1e-66 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) Potri.003G048700 [exp] 168 / 9e-52 AT1G71260 283 / 5e-97 WHIRLY 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF08536 [flax] [poplar] Whirly Whirly transcription factor
Representative CDS sequence Show only first row Show all	>Lus10036723 pacid=23171129 polypeptide=Lus10036723 locus=Lus10036723.g ID=Lus10036723.BGIv1.0 annot-version=v1.0 ATGGAACGGTTCGGATTCCGGCGAAACGACGGTGTGGCGTTTCGTTCTCCAGAACCGCCGGAGCGGCGAGCAGCCAACACACCGAGGAGCAGCAAGCTCA CCGTGGAGTGCCGGCAGTCATCGTACTTTGAGCAGCAGAATTTTAGCAACAGCTCAGGGAATAGTTCTTCATCTTCGCGGGGCCAGGGAGCTTCTAACGG TGGAGAATTGCCGGCTAGGGTTTATGTGGGGCATTCAATCTACAAAGGGAAGGCTGCTCTTACTGTGGAACCTAAATCACCGGAGTTCACGCCACTAGAA TCTGGAGCGTTTAAGCTAGCGAGGGAAGGGTTTGTCTTCTTACAATTTGCTCCAGCATCTGGTCTCCGACAATACGACTGGAGCCGGAAGCAGATGTTTT CGTTGTCGGTTACTGAAATCGGAACTCTAGTAAGCCTTGGCGCAAAGGAATCCTGTGAGTTTTTTCACGATCCTAATAAAGGCAAAAGTGATGAAGGTAA GATCAGGAAGGTATTGAAGGTGGAGCCGCTCCCAGATGGCTCAGGCCACTTCTTTAACCTAAGTGTCCAAAACAAACCCTTGAACTTGGACGAGAGCATC TACATTCCAGTAACAAGAGCAGAGTTCACTGTCCTTGTCTCAGCTTTTAACTACATCTTGCCATACCTATTAGGATGGCACGCATATGCAAACTCGATAA CCCCCGGTGACTCTACCAAGCCGAATAATGCCAGCCCGAGATATGGATCAGACTACGAATGGAGCAGGTGA
AA sequence Show only first row Show all	>Lus10036723 pacid=23171129 polypeptide=Lus10036723 locus=Lus10036723.g ID=Lus10036723.BGIv1.0 annot-version=v1.0 MERFGFRRNDGVAFRSPEPPERRAANTPRSSKLTVECRQSSYFEQQNFSNSSGNSSSSSRGQGASNGGELPARVYVGHSIYKGKAALTVEPKSPEFTPLE SGAFKLAREGFVFLQFAPASGLRQYDWSRKQMFSLSVTEIGTLVSLGAKESCEFFHDPNKGKSDEGKIRKVLKVEPLPDGSGHFFNLSVQNKPLNLDESI YIPVTRAEFTVLVSAFNYILPYLLGWHAYANSITPGDSTKPNNASPRYGSDYEWSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	0	1
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	3.2	0.9110
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	3.2	0.9004
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	6.3	0.8867
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	7.5	0.8799
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	7.7	0.8829
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	8.4	0.8688
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	13.6	0.8787
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	13.9	0.8826
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10034489 [exp]	15.0	0.8481
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	15.7	0.8397

Compare expression of checked genes

Lus10036723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.