Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41760 516 / 0 Nucleotide-sugar transporter family protein (.1.2) AT4G35335 213 / 6e-66 Nucleotide-sugar transporter family protein (.1) AT3G59360 149 / 4e-41 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2) AT2G43240 149 / 9e-41 Nucleotide-sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037204 [exp] 631 / 0 AT5G41760 542 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026562 [exp] 226 / 2e-70 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013845 [exp] 190 / 3e-56 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025486 [exp] 158 / 3e-44 AT2G43240 678 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10027009 [exp] 161 / 3e-43 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094600 [exp] 540 / 0 AT5G41760 525 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.003G136800 [exp] 536 / 0 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 219 / 2e-68 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G077300 [exp] 156 / 2e-43 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.017G035800 [exp] 156 / 2e-43 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 152 / 3e-42 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10036726 pacid=23171237 polypeptide=Lus10036726 locus=Lus10036726.g ID=Lus10036726.BGIv1.0 annot-version=v1.0 ATGAGGCCCTTTTACGGCCCATATATTAAAACGTCGTCATTCTCGTTCTTTTTGTTAGATCCATCGGTGAAAGCTATAGCGGAAGAAGCAAACTCAGCTG CAGTCGTTAATGGCGGACTACTGAGAGAGATCCGAGTGAGAGGTAGACTGACAGCTCAGGCCGAAGATCGTTCTTGCTCGGCTGTAGCAGATCGGGAAGA GCACTATGAAATGGGAATTTTGACTACCCTGTCTCAAACTAAAGGAAGGTATCTGTATGACTATGCAACGGTGCCCTTTCTTGCCGAATTATACAAGCTA CTGGTTTCTGCTTCACTTCTGTGGCGAGAATCCCGGACATCACAATCGACGAAGATAACCACGGAATGGAAGACTGTGCGGCTGTATCCCATTCCATCTA TCATATACCTGATCCATAACAATGTTCAGTTTGCTACACTTACTTATGTGGACACCTCAACGTACCAGATCATGGGAAATTTAAAGATTGTCACCACTGG TATATTATTCAGGTTGTTCCTTAAGAGGAAGCTGTCTAATCTCCAATGGATGGCAATTGTTCTATTAGCTGTTGGAACAACCACTAGTCAGGTTAAGGGG TGTGGAGAAGGTTCCTGCGAATCTCTGTTTTCAGCTCCAATTCAGGGTTACATGCTGGGCGTTCTGTCTGCTTGCCTCTCAGCATTAGCTGGCGTCTACA CAGAGTTTCTGATGAAGAAGAACAACGATAGCTTGTACTGGCAGAATGTACAGTTGTATACGTTTGGAGTAAGTTTCAATATGGCAAAGCTTATAGTAGA TGATTTCCAAAGCGGATTTGAAAAGGGACCCTGGTGGCAGCGTCTCTTCAACGGATATAGTACAACCACTTGGCTGGTTGTTTTGAATCTTGGCTCCACT GGTTTACTCGTTTCATGGTTGATGAAGTATGCTGATAATATAGTGAAGGTCTATTCAACATCTATGGCAATGCTGCTGACGATGGTTCTTTCTGTATTCC TGTTTTCGTTTAAGCCGACACTCCAGCTCTTCTTGGGTATCATCATATGTATGATGTCACTTCACATGTATTTCGCCCCTCCAAACAAGCTTGTGGATTT GCCTACACCCGTCAAACCTGCTCCCGAACCCCTGAAAGAAGTTTCTATTGACCAAAGGACCGAATCCTGA
AA sequence Show only first row Show all	>Lus10036726 pacid=23171237 polypeptide=Lus10036726 locus=Lus10036726.g ID=Lus10036726.BGIv1.0 annot-version=v1.0 MRPFYGPYIKTSSFSFFLLDPSVKAIAEEANSAAVVNGGLLREIRVRGRLTAQAEDRSCSAVADREEHYEMGILTTLSQTKGRYLYDYATVPFLAELYKL LVSASLLWRESRTSQSTKITTEWKTVRLYPIPSIIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKRKLSNLQWMAIVLLAVGTTTSQVKG CGEGSCESLFSAPIQGYMLGVLSACLSALAGVYTEFLMKKNNDSLYWQNVQLYTFGVSFNMAKLIVDDFQSGFEKGPWWQRLFNGYSTTTWLVVLNLGST GLLVSWLMKYADNIVKVYSTSMAMLLTMVLSVFLFSFKPTLQLFLGIIICMMSLHMYFAPPNKLVDLPTPVKPAPEPLKEVSIDQRTES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41760			Nucleotide-sugar transporter f...		Lus10036726 [exp]	0	1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	10.1	0.8168
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	11.5	0.8033
AT3G53540			unknown protein		Lus10024434 [exp]	12.0	0.7797
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	12.7	0.8056
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	14.6	0.7984
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	16.1	0.7930
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	17.9	0.7889
AT1G50660			unknown protein		Lus10040076 [exp]	23.3	0.7936
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	26.1	0.7814
AT2G40815			Calcium-dependent lipid-bindin...		Lus10030501 [exp]	26.2	0.7787

Compare expression of checked genes

Lus10036726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.