Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14350 166 / 2e-48 MYB FLP, AtMYB124 FOUR LIPS, myb domain protein 124, Duplicated homeodomain-like superfamily protein (.1.2) AT2G02820 166 / 4e-48 MYB ATMYB88 myb domain protein 88 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037202 [exp] 469 / 2e-169 AT2G02820 168 / 1e-48 myb domain protein 88 (.1.2) Lus10030494 [exp] 226 / 4e-71 AT2G02820 457 / 4e-158 myb domain protein 88 (.1.2) Lus10012847 [exp] 160 / 9e-46 AT2G02820 447 / 3e-154 myb domain protein 88 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148400 [exp] 229 / 3e-72 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.010G093000 [exp] 216 / 2e-67 AT2G02820 470 / 4e-163 myb domain protein 88 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036728 pacid=23171214 polypeptide=Lus10036728 locus=Lus10036728.g ID=Lus10036728.BGIv1.0 annot-version=v1.0 ATGGAAGATAAGAAGAGGAAGAAGATCAATGGCGGTGGGAGTGGAAGTGAGGAATCCAGAAGTGGGGAATCCAGTAAGAAGAAGGAGAGACATATTGTCT CATGGACGGATGAGGAAGATGATATACTTCGTCAGCAGATAAGCTTACATGGAACTGAGAATTGTTCGGAAATACTCCGGGACTTCCTTGCTCACTTACT CATTAAACTTGGCAAGCAGGTTCTCCAAGATTTCCTGAAAATGGGCAAAGATGACGAGTTACCTAGTTCTGCAATTTCCGACATTGATTTCCAACTCGAA GATTTCAAAGACTTGATAGAAGATTTAAGGAACAGCAGCGATGGAAGTCATCTATCTTGGAGGCAGCCAGCTCTTTATGAAGCATCTCAAGCTAGCTCGG AATTCAGCACAGGGTCAAGTTTAATGCCATATCAAGCACCGGATGGTGCAAGTGACTTGCAAAGTGTCCACATTGCAGGACAAAAGGGCATAGGCGAATG TGACAAAGAAATTATCTCCAGAGAAAACATAGCGGAAGGGGGTCTGTTTCAATCCTTTGACGAGCAAACAAAAGAAGACACAGTTGTTTCGTGTTCATCA AGTACAGAGTTCGGCTCCCCTTGTCAGGTTACTCCAATCTTCAGATCTTTGGGAGCAGGAGTACCTAGCCCCCATTTTTCTGAAAGTGAACGGAGATTTC TACTAAAAACTCTTGGAGTAGAGTCTCCATTTCCGAATCCAAGCATCGGCTCCTCTCAACCACCTCCCTGCAAAAGGGTCTTGCTCAAAAGCTTATGA
AA sequence Show only first row Show all	>Lus10036728 pacid=23171214 polypeptide=Lus10036728 locus=Lus10036728.g ID=Lus10036728.BGIv1.0 annot-version=v1.0 MEDKKRKKINGGGSGSEESRSGESSKKKERHIVSWTDEEDDILRQQISLHGTENCSEILRDFLAHLLIKLGKQVLQDFLKMGKDDELPSSAISDIDFQLE DFKDLIEDLRNSSDGSHLSWRQPALYEASQASSEFSTGSSLMPYQAPDGASDLQSVHIAGQKGIGECDKEIISRENIAEGGLFQSFDEQTKEDTVVSCSS STEFGSPCQVTPIFRSLGAGVPSPHFSESERRFLLKTLGVESPFPNPSIGSSQPPPCKRVLLKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10036728 [exp]	0	1
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10037202 [exp]	2.0	0.9529
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	7.3	0.9428
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	7.7	0.9248
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	9.9	0.9486
AT1G21510			unknown protein		Lus10018955 [exp]	12.4	0.9372
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10018013 [exp]	13.9	0.9420
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	20.8	0.9356
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	23.5	0.9350
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	26.8	0.9211
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	28.7	0.9297

Compare expression of checked genes

Lus10036728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.