Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14345 94 / 1e-24 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037201 [exp] 101 / 2e-27 AT1G14345 229 / 8e-77 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093300 [exp] 94 / 2e-24 AT1G14345 194 / 3e-63 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036729 pacid=23171155 polypeptide=Lus10036729 locus=Lus10036729.g ID=Lus10036729.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTCCATTTCCTCTCGCCGCCGACGACTACAACCTCCTCCACCGCCTCAAGAATCACCACCACCACAACTCCATCTTCCTTCCACCTTTCCA AAATCCCCTCCCCTCTCCGTCGGATTTCGACCACCACAAGGATCAACGTCTCATCTCCAGCCAACAACAAATCCCCAACAAGCACCTCCTCAACAAAACC CTCGAAATCATCCTCCTCCGCGAGGAAGCCTCCGCCGACGGAGGAAGAGATTAAGGACGTGCAGGTGGTGCCGAGGCTCATCGGGGAGTGGGGGGACGTG TTCATCACGCTCCGGGATGGGACTAAAGTTGATCTTAGAAGCGTGCCCAAGTTTCGGGAGATTGCCAGTTACTGCCGGTCTATGATCGAGGAGCCAGCCG CTGCAGCGTCTGCGGCGGAGAATCGCCAGGCTAAAGGTTTCTGA
AA sequence Show only first row Show all	>Lus10036729 pacid=23171155 polypeptide=Lus10036729 locus=Lus10036729.g ID=Lus10036729.BGIv1.0 annot-version=v1.0 MASVHFLSPPTTTTSSTASRITTTTTPSSFHLSKIPSPLRRISTTTRINVSSPANNKSPTSTSSTKPSKSSSSARKPPPTEEEIKDVQVVPRLIGEWGDV FITLRDGTKVDLRSVPKFREIASYCRSMIEEPAAAASAAENRQAKGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10036729 [exp]	0	1
AT5G42070			unknown protein		Lus10023063 [exp]	3.5	0.9446
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	7.6	0.9154
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	9.1	0.8426
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	9.8	0.9049
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10009609 [exp]	10.8	0.9042
AT3G12345			unknown protein		Lus10040344 [exp]	14.5	0.9041
AT4G39110			Malectin/receptor-like protein...		Lus10028805 [exp]	16.9	0.8536
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	18.7	0.8936
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	18.9	0.8407
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	19.2	0.8661

Compare expression of checked genes

Lus10036729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.