Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26945 108 / 4e-32 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G28857 103 / 3e-30 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G39860 100 / 3e-29 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G74500 94 / 2e-26 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) AT3G47710 89 / 7e-25 bHLH BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) AT5G15160 87 / 5e-24 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037198 [exp] 133 / 6e-42 AT1G26945 114 / 1e-34 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012842 [exp] 120 / 1e-36 AT3G28857 103 / 3e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030490 [exp] 115 / 5e-35 AT3G28857 102 / 4e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10024241 [exp] 93 / 5e-26 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10023610 [exp] 88 / 4e-24 AT3G28857 109 / 9e-33 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10008626 [exp] 56 / 3e-11 AT3G28857 71 / 1e-17 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081300 [exp] 109 / 9e-33 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.004G128400 [exp] 107 / 1e-31 AT5G39860 124 / 8e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.015G063300 [exp] 100 / 3e-29 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.012G069500 [exp] 99 / 1e-28 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036732 pacid=23171085 polypeptide=Lus10036732 locus=Lus10036732.g ID=Lus10036732.BGIv1.0 annot-version=v1.0 ATGTCGAGCAGAAGATCATCCTCGTCGAGGTCAAGACAATCCTCGAGGAGCATGATATCCGACGACCAGATCATCGACCTCGTCTCCAAGTTACAACGTC TTATCCCTGAAGCTCGCTCTTCCTCTCGTCGCTCTCGTGACAAGGGTTCCGCGTCGAAGGTGCTGCAAGAGACGTGCAACTACATAAAGGATCTGCATAG GGAAGTCGACGATCTGAGCGACCGGTTATCGGAGCTACTAGCGACAACGGATTCCGACAGTGCTCAAGCCGCCATTATTAGGAGCTTGCTTATGTAA
AA sequence Show only first row Show all	>Lus10036732 pacid=23171085 polypeptide=Lus10036732 locus=Lus10036732.g ID=Lus10036732.BGIv1.0 annot-version=v1.0 MSSRRSSSSRSRQSSRSMISDDQIIDLVSKLQRLIPEARSSSRRSRDKGSASKVLQETCNYIKDLHREVDDLSDRLSELLATTDSDSAQAAIIRSLLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10036732 [exp]	0	1
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	1.4	0.9800
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	2.4	0.9783
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	6.7	0.9750
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013614 [exp]	14.8	0.9249
					Lus10008326 [exp]	17.3	0.9798
AT3G59090			unknown protein		Lus10040880 [exp]	19.7	0.9705
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	21.0	0.9648
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	21.8	0.9588
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	24.7	0.9780
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	25.9	0.9537

Compare expression of checked genes

Lus10036732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.